Andrographis paniculata: 127256966
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Entry
127256966 CDS
T08689
Name
(RefSeq) 5'-3' exoribonuclease 3
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
apan
Andrographis paniculata
Pathway
apan03008
Ribosome biogenesis in eukaryotes
apan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apan00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
127256966
09123 Folding, sorting and degradation
03018 RNA degradation
127256966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apan03021
]
127256966
03019 Messenger RNA biogenesis [BR:
apan03019
]
127256966
03009 Ribosome biogenesis [BR:
apan03009
]
127256966
03016 Transfer RNA biogenesis [BR:
apan03016
]
127256966
Transcription machinery [BR:
apan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127256966
Messenger RNA biogenesis [BR:
apan03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
127256966
Ribosome biogenesis [BR:
apan03009
]
Eukaryotic type
Pre-60S particles
RNases
127256966
Transfer RNA biogenesis [BR:
apan03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
127256966
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
127256966
NCBI-ProteinID:
XP_051139158
LinkDB
All DBs
Position
Unknown
AA seq
1101 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVIEEEPVEIEGIKIPVDTSKPNPNNIEYDNLYLDMNGIIH
PCFHPEDRPSPTTFDEVFRCIFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEERLREEFEREGRKLPPKQESQLFDSNVITPGTPFMAVLSVALQYYIHM
RLNHDPGWKNTKVILSDANVPGEGEHKIMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAADCQGKVKRKAGEFDEKGDAEIVPKK
PYQFLNIWTLREYLEYEMRIPNLPFELDLERIIDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLMTVYKKELRAMGGYLVNGKMPNLSQVEYFIQAVGSFEDKIFQKRARLHKRQAERVK
RDKSQAKRGDDSEPTNRPDSLVPVSRFHGSRLASGPSPSPYQPKGSVSGRHNQHGQVTRS
MSDLDIAGKAPKVARLDSGATIGAAIVEAEKSLEVEESENKEELKSKLKELLREKSDVFN
METQDEDKIKLGEPGWKERYYEEKFLATSPEELDALRKDVVLKYTEGLCWVMHYYYEGVC
SWQWFYPYHYAPFASDLVNLGQLNINFELGTPFKPFNQLLGVFPAASAHALPEQYRKLMT
DPNSPIIDFYPTDFEVDMNGKRFSWQGVAKLPFIDEQRLLEEVAKIEHTLTEEEARRNSV
MSDMLFVSLSHTLSPYIFSLDDRCKQLPDKERTTVREKLDPGASGGMNGYISLCTGDPCP
PLFRSPIQGMEDIMSNQVICAIYSLPDYHEHIARPPPGVTFPKKTVTVGDLRPEPVLWHE
DSGRRPFDNGRYNNNNNNRHNDNRHNNRHNNNSMNGAVTGRHLGDAAHRLVSNSLQLRRD
NNGHPNHMHPPYPPADPQRYQAYRNPMYPPPDHAVVQPNSTYYPPRPSSSMPYRQQYTAP
PPRNPPPTVPNPRYNRTQNPPPEPNHRYAAPQPQDNSRPGYYAQGQPQPGYGYSPYTAHN
SGEPLIRPGVYYHQLGGYNGGGSEDERSYGHGNYSNRGSGGGRSGDSYSDRGYNQQRHPG
NQFAGRGRDGGRRPPHSDYRR
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcgttttaccggtggctggcggagaagtatccgatggtggtggtggat
gtgattgaggaggagccggtggaaatcgaaggtattaaaattccggtggatacgagcaag
ccaaatcctaacaacatcgagtacgataatttgtatcttgatatgaatggaatcatacac
ccgtgcttccatcctgaggaccgcccttctccaacgacatttgatgaggtgtttcggtgc
atatttgactatatagataggctttttgtgatggtacgaccacggaagctgctttttatg
gcaattgatggtgtggcacccagagctaagatgaatcaacaacgatcaaggcggtttcga
gcagccaaagatgctgcagatgcggcagctgaagaggaaaggcttcgggaagagtttgag
cgtgaaggcaggaagctccctcccaaacaagaatcacaactcttcgactcaaatgttatt
acacctggaaccccattcatggcggttctatctgttgctctgcaatattacattcacatg
agactaaatcatgaccctgggtggaaaaacaccaaggttatactttctgatgcaaatgtt
cctggtgagggggaacataagatcatgtcatatatccgtctccaaaggaatcttcctggt
tatgacccaaatacccgtcattgcctgtatgggttggatgctgatctgatcatgttggct
ttggcaacccatgaagtccatttttctatacttagggaggttgtatttactcctggacag
caagacaaatgctttctctgtggtcaaatgggacacctagctgcagattgtcaaggtaaa
gtaaagagaaaggctggggagtttgacgagaaaggcgatgcggagattgtgcctaaaaag
ccctatcagttcctcaacatctggactctccgcgaatatttagaatatgagatgaggatt
cctaatcttccatttgagcttgatcttgaacgaattattgacgactttatcttcatgtgc
ttctttgtgggcaatgacttcttgccacatatgcccactcttgagattcgtgagggcgca
atcaacttgctgatgactgtttataaaaaagagttgagggctatgggtggctacttggtt
aatggaaaaatgccaaacctgagccaggtggagtactttattcaagctgtgggatcattt
gaagataaaatatttcagaaaagggctcgcttgcataagagacaagccgaaagagtcaag
cgtgataaatctcaagctaaaagaggggatgattctgaaccaacaaacaggcctgattct
cttgttcctgtttctcgatttcatggttctcgacttgcttctggtccttcaccctcaccc
tatcagcccaagggttcagtttctggtaggcacaatcaacatggccaagttaccagaagt
atgtcagatcttgatattgctggaaaggcaccaaaagttgctcgattggattctggagcc
actattggcgctgctattgtagaggctgagaagagcctagaagtggaagaaagtgaaaac
aaagaagagttgaaatccaagctgaaagagttgcttcgcgagaagtctgatgtatttaat
atggaaactcaagatgaggataagatcaaattgggagaaccagggtggaaagagaggtat
tatgaagagaagtttcttgcaacatctcccgaggaacttgacgcactacgaaaagatgtg
gttttgaaatacacagaagggttatgctgggttatgcactactattatgagggcgtctgt
tcctggcaatggttttatccgtaccattatgctccatttgcttcagaccttgtaaatctt
ggacaattgaacataaactttgagcttggaactccatttaagccattcaatcaattgctt
ggggtgtttcctgctgcaagtgctcatgctctgcctgagcaatacaggaagctgatgact
gatcctaattcacctataatagatttctatcctacagactttgaagtggacatgaatggc
aagcggttctcctggcagggtgtggccaaattgcccttcattgatgagcaacgtctactt
gaagaagtggcaaaaattgaacacactcttacggaggaggaagctcgtaggaacagtgtg
atgtctgacatgctttttgtgtcattatctcatactctatcaccgtatatattttccctt
gatgatcgctgtaagcagctgcctgataaagaaagaactactgttagggagaagcttgat
ccaggagccagtggtggaatgaatggctatatttctctttgcactggggatccttgccct
cctctcttcagatcacctattcaagggatggaagacattatgagcaatcaagtcatatgt
gctatatacagtctaccagactatcacgaacacattgctcgacctcccccaggtgttact
ttcccaaagaagactgtaactgttggtgatctacgaccagagccagtactttggcatgaa
gattccggaaggcgcccattcgacaatggaaggtataacaacaacaataacaatcggcac
aacgacaacaggcacaacaaccggcacaacaacaacagcatgaacggcgctgtaaccggc
cgacacctcggagatgctgcacatcgccttgtttctaacagcttacagctaagacgagac
aacaacggtcaccccaaccacatgcaccctccctacccaccagccgatccacagcgttat
caggcttatcggaaccctatgtaccctcccccagatcatgccgtggtgcaaccaaattcg
acctattacccgccccgaccttcgagctccatgccttaccggcaacaatacaccgcccca
cctccacgtaatccccctccaaccgtccccaaccctagatacaaccgaacccaaaatcct
ccccccgagccgaaccataggtatgcagcaccccaaccccaggacaactcgagacctgga
tactacgcccaaggtcaaccccaaccgggatacggatactccccgtacactgcacacaat
tctggtgagcctctgatccggccgggtgtttactatcatcagctgggcgggtacaatgga
ggaggatctgaagatgaacgatcctacggacacggtaactatagcaatcgaggcagtggc
ggcggtagatcaggtgattcttattcggacaggggatacaatcagcaacgccacccgggg
aaccagtttgcgggccggggcagggacggaggcagacgaccaccgcactcggattacagg
cggtag
DBGET
integrated database retrieval system
