Andrographis paniculata: 127265138
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Entry
127265138 CDS
T08689
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
apan
Andrographis paniculata
Pathway
apan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
apan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127265138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apan03021
]
127265138
03019 Messenger RNA biogenesis [BR:
apan03019
]
127265138
Transcription machinery [BR:
apan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127265138
Messenger RNA biogenesis [BR:
apan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127265138
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
127265138
NCBI-ProteinID:
XP_051150775
LinkDB
All DBs
Position
Unknown
AA seq
922 aa
AA seq
DB search
MDRTSRFQNPMSLSSGGFNKPPSIQNEGVGMKPLPPMILDRFRAMVKEREDELKVFGGGA
LLPLSTDEIVRIYEIVLSELTMNSKPIITDLTIIAGEQRAHVEGIADAICARIIEVPADQ
KLPSLYLLDSIVKNIGKEYIKHFAARLPVVFCEAYAQVHPSMHPAMRHLFGTWATVFPLI
VLQTIEAQLQFSPSMNRQPTGSSSTRASESPRPTRGIHINPKYLEVQPHFGHSTIDPIGT
EELNTIGRSELGTSGLEAVKKSLPSTSRIMRPSSPYKIGHVGSFSPLIDEFGKDGSPNRI
AFRTSPSRPGINPGLSRVMGKDEDTHEWRNRNWQGISSQYPKTSASHKYGNGADLSGPRA
LISAYGMDEREKNLKRKHPVDSNGADQKAAIKTWQNTEEEEFDWEDMNPTHPPPSKLMSK
HGLTTNHAGPPLPDYRGNLSKSGRESINNSGGVLPNAAGSSDVPSQIPPNMAREPLSFPH
HQPQRNVNVEADRKFGRPTDIVQTLGSPYDLPAPDIRSADDASAPMAWGPTKLESSHALP
SLSSLPQQIHTRGQFGMNSAGNMGVDQSLNKTVHNEHHFSITGSMSQLNLPQIHGQRPPI
NLQNASLPNSFMVQGSRQNFPLPSSVPPPSNPMIRPLNYGYMGPMQGPPICTASSILIPG
GQPSMPIHNAPNMPFNVHGGAVPSLPGVPLPGPSQPLPIGQIAPNPPAGSAFTGLISSLM
AQGLISATKQDSVGLEFDQDMLKVRHESAITALYADLPRQCKSCGRRFKDQEEHSKHMDW
HVSKDRTLKNRKTKPPPKYFVSVSMLLRGTEAVGPEAVPGFLPAESTVEKKDDEELAVPA
DEDQNTCALCGEPFEDFYSDEMEEWMYKGAVYMYAAAGSTAGMDRSQLGPIVHAKCRSDS
HEDFGKDKGEPTEEDRRKRLQS
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtacctcgagatttcagaaccctatgtctctgagcagcgggggttttaacaaa
cccccgtcgattcaaaacgaaggtgttgggatgaagcccctgccgccgatgattctcgat
cgattcagggctatggtgaaggagagagaggacgagcttaaggtttttggtggtggggca
ctattgcccttgagcacagatgaaattgtgcggatttacgagattgttttgtctgagctc
acaatgaattcgaagccaatcatcacagatctcactataattgcgggagagcagagggct
cacgttgaaggaattgcggacgccatttgtgctcggattattgaggttcctgctgatcag
aaacttccttctctgtaccttttagacagcattgtcaagaatataggcaaggaatacatt
aaacactttgctgctcgcttgcctgtggttttctgtgaagcctatgcacaagtccaccct
agcatgcatccagcaatgcgtcatctttttggtacatgggctacagtctttccattgata
gtactccaaactatagaggcacaattgcagttttctccttccatgaatcgacaacccact
ggctcaagttcaacaagagcttctgagtctcctaggccaacacgtggtatacacataaat
cctaaatatttggaagttcagcctcattttggacattcgaccattgatcctataggaact
gaagaactaaacacaattggccgttcagaacttggaacttctggtcttgaggccgtaaag
aagtcgcttccatcaacttccaggattatgcggccttcctctccttataaaattgggcat
gttggatcattttccccattgattgatgaatttggtaaggatggttctcctaatagaatt
gctttcaggacctcaccatctcgtcctgggatcaatcctgggctaagcagagtgatgggg
aaagatgaggatacacatgaatggcggaatagaaattggcaggggatttccagtcaatat
cctaaaacatctgcttctcataagtacggcaatggggctgatcttagtgggcctagagct
ttgattagtgcctatggaatggatgaaagagaaaaaaatttgaaacggaaacatccggtg
gactcaaatggtgctgaccaaaaggcagctattaagacatggcaaaacacagaagaggaa
gaatttgactgggaagatatgaacccaactcatccacctcctagtaaattgatgtcaaaa
catggccttacaactaaccatgctggtcctccattacctgattaccgaggcaacctgtcc
aagtcaggtcgtgaatcaattaacaactctgggggagtcctgccaaatgctgctggctca
agtgatgtgccgagtcagattcctcctaacatggcccgagaacccttgtctttcccacat
catcaacctcagagaaatgtgaatgttgaagctgatagaaagtttggcaggcctactgat
attgtgcaaacattaggttctccatacgaccttccggctcctgatattcgatcagctgat
gatgcatctgcaccaatggcttggggtcctactaagcttgagagctcacatgctctgcct
tcactttcttctcttcctcaacaaatccataccagaggtcaatttggtatgaacagtgct
ggcaatatgggtgttgaccagagtttgaacaagactgttcataatgagcatcatttcagc
atcactgggagcatgtctcagcttaacctacctcaaattcatggtcagcgcccacccata
aatttgcaaaatgcttccctgccaaattcatttatggtccaagggtctagacaaaacttt
cctttgccatcttcagtaccccctccatccaatccgatgatacgacctctcaattatgga
tacatgggaccaatgcagggtcctccaatttgcactgcttcatctattctaattcctggt
ggacagccatcaatgccaatccataatgctcctaacatgccatttaatgtccatggggga
gctgtaccctctctaccaggagttcctcttcctggtccatctcagccactacctataggt
caaattgctcccaaccctccagctgggagtgcattcacaggtttaattagttctttaatg
gcccaaggtttaatatcagccacaaagcaggattctgttggactggaattcgatcaagac
atgctcaaggtgcgacacgaatctgcgataactgctttatatgcagatcttcctagacaa
tgcaaaagttgtggtcgtcgattcaaagaccaagaggaacacagtaagcatatggattgg
catgtcagcaaggaccggacattgaaaaaccgtaagacaaagcctccgccaaagtatttt
gtgagtgttagtatgttgctcagaggcacggaggccgtgggacctgaggcagttcctgga
tttttacctgctgagagcactgtggaaaagaaggatgatgaagaattggctgttcctgcc
gatgaagaccagaacacatgcgcattgtgtggagaaccctttgaagatttttacagtgat
gaaatggaagaatggatgtacaagggcgctgtttatatgtatgctgcagctggttcaaca
gccggaatggacagatcacagttaggaccaatagttcatgctaaatgtagatcggactct
catgaagattttggaaaggataagggggaaccaacagaagaagataggcgaaaaagattg
caaagttag
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