Andrographis paniculata: 127265160
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Entry
127265160 CDS
T08689
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
apan
Andrographis paniculata
Pathway
apan03015
mRNA surveillance pathway
apan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127265160
09123 Folding, sorting and degradation
03018 RNA degradation
127265160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apan03019
]
127265160
03041 Spliceosome [BR:
apan03041
]
127265160
Messenger RNA biogenesis [BR:
apan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127265160
mRNA cycle factors
Stress granule specific factors
127265160
Spliceosome [BR:
apan03041
]
Complex C
Other components
Complex C specific factors
127265160
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
SET_assoc
RRM_7
RRM_RdRP1_2
RBD_DGKtheta
RRM_MARF1
DUF5062
HPS3_C
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
127265160
NCBI-ProteinID:
XP_051150812
LinkDB
All DBs
Position
Unknown
AA seq
646 aa
AA seq
DB search
MAQIQVQPQAVATTGPNGVAVPPPPAVAGQLLSTSLYVGDLDFNVTDSQLYDLFSQVGQV
ISVRVCRDLGTRRSLGYGYVNFSNPQEASRAMEMLNFTPLNNKSIRVMYSHRDPSIRKSG
TANIFIKNLDKTIDNKALHDTFSSFGNILSCKVATDQNGQSKGYGFVQFDHEESAQNAID
KLNGMLINDKQVYVGHFLRKQERDIASNKTRFNNVYVKNLAESTTDDELNKIFGEYGIIT
SCIVMRDADGKSKCFGFVNFENADDAAKAVEALNGKKFDEKEWYVGKAQKKLEREQELKS
RFEMAARETVDRFQGVNLYIKNLDDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF
VAFSTSEEASRALSQMNGKMVISKPLYVALAQRREDRRARLQAQFQQMRPLGMPQSIGPR
MPIYPPGAPGIGQQLFYGQAPPAIIPPQGGFGYQQQLVPGLRPGGAHMPNFFVPLVQQGQ
QGRPAGRRGAGQQPQQPVPPMQQQMLPRGGRMFRYPTGRNGPDAPPMAGGMLSAPYDISG
MIPRDAAAAPQPMPITALASALANATPEHQRTMLGENLYPLVDQLEHEHAAKVTGMLLEM
DQTEVLHLLESPDALKNKVAEAMDVLRNVQQSNVPSEQLSTLSLAD
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaattcaggtgcagcctcaggcggtggcgacgacggggccgaacggagtggcg
gtgccgccgccgccggcagtggctgggcagcttctttcgacgtctctgtatgtgggtgat
ttggatttcaacgtgacggattcacagctctacgatctgtttagtcaggttggacaggtg
atttcggttagggtttgcagagatctgggcactcgccggagtcttggatatggatatgtt
aactttagcaaccctcaagaagcttccagagcaatggaaatgttgaatttcactcctctc
aataacaagtcgattcgtgtgatgtattctcaccgggacccaagtatccgaaagagtggc
acagcgaatatatttatcaaaaatttggataaaaccattgataacaaagcactgcacgac
actttttcaagctttgggaacatcctttcttgcaaagtggcaacggatcagaatggccag
tccaagggctatgggtttgtgcaatttgatcacgaagaatcggcgcagaatgctatagat
aagttgaatggaatgcttattaatgataaacaggtgtatgttgggcatttcctccgtaag
caagagagggacattgcatcaaataaaactaggttcaacaacgtctacgtgaaaaactta
gctgaatctaccactgatgatgagttgaacaaaatttttggtgaatatggaattatcacg
agctgtatagtcatgagggatgctgatggaaagtccaaatgttttggatttgtcaatttt
gaaaatgctgatgatgctgctaaagctgttgaagctctaaatgggaagaaatttgatgaa
aaagagtggtatgttgggaaagcccagaagaagttggagagagaacaggagctcaaaagt
agattcgagatggccgccagggaaactgtcgacagatttcaaggagtaaatctatatatt
aagaacttagatgatagcattgatgatgaaaaattgaaagaactcttttcagagtttggt
acgatcacatcgtgcaaggttatgcgggatcctagtggaattagcaaggggtcgggattt
gtcgccttttctacttctgaggaagcttctcgggctctttctcaaatgaatgggaaaatg
gtgatcagcaaaccactctatgttgcgcttgcgcagcgtagagaagatcgaagagcccga
ttacaggctcagtttcaacaaatgaggcctcttggaatgccccagtctattggtccacgc
atgccgatttaccctcctggcgctcctggcatcgggcagcagctattttacggacaagct
cctcctgccataatcccccctcagggcggatttggttatcagcaacagcttgttccaggg
ctgcgccctggaggcgctcacatgccaaatttctttgtgccgctagttcaacagggtcag
cagggacgccctgccggtaggcgaggagcagggcaacaaccgcagcagcccgtgcctcca
atgcagcaacagatgttacccagggggggtaggatgtttaggtaccctaccggccggaat
ggacctgatgcgccgcccatggccggtgggatgctctctgctccgtacgacatcagcggg
atgattcctcgggatgcagcagccgcgccgcagcctatgccgatcactgccttggcttct
gcgctggctaatgcgactcctgagcaccaaaggacgatgttgggtgagaatttgtatcct
ctcgtcgatcagcttgagcatgaacatgctgcgaaagtcaccggaatgctcctagagatg
gaccagactgaggttctgcatctgctcgaatctcctgatgctttgaaaaataaggttgcc
gaggctatggatgttctgaggaatgttcagcagtcgaatgtcccttccgagcaactttcc
acgctgtccctcgccgactaa
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