Anaeromyxobacter paludicola: AMPC_08750
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Entry
AMPC_08750 CDS
T08525
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
apau
Anaeromyxobacter paludicola
Pathway
apau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMPC_08750 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apau03021
]
AMPC_08750 (rpoC)
03400 DNA repair and recombination proteins [BR:
apau03400
]
AMPC_08750 (rpoC)
Enzymes [BR:
apau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMPC_08750 (rpoC)
Transcription machinery [BR:
apau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMPC_08750 (rpoC)
DNA repair and recombination proteins [BR:
apau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMPC_08750 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BDG07762
LinkDB
All DBs
Position
complement(962310..966470)
Genome browser
AA seq
1386 aa
AA seq
DB search
MKDIFNFFEKPKDPLSFSAIRISLASPDKIRQWSHGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHITLATPVAHIWFLKSL
PSRIGNLLDITLKDLEKVLYCESYIVLDPKETTLVKGELLSEERYGKAQEEFGDDGFVAG
MGGEAVLELLRGIDIINLSEQLRKEMKEATSDAKRKKIAKRLKVVDAFRESGNKPDWMML
EVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRML
QEAVDALFDNGRRGKTITGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKIMALELFKPFIYNKLEEKGYVTTIKSAKKMVEKERPEVWDILDDVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQME
ARVLMMSTNNILSPAHGKPIIVPSQDIVLGIYYMTRERAFAKGEGKFFASPDEVRAAYDQ
GEVALQAKVTVRMDGQRVETTTGRVLLYDIVPKQLPFSSINKVMDKKQLQNLIDLTYRLC
GEKETVLLADRVRSMGYGNATKAGISIALSNMIIPKKKQELLGRATKEVDDIHAQYAEGL
ITFGERYNKVIDIWAQVTEEVAKEMMDEISTEVAVGIGKDGKREERKQPSFNAIYIMADS
GARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLNVLQYFISTHGARKGLADTAL
KTANSGYLTRRLVDVAQDAIITEYDCGAMDGITMGSLVEGGEIIEPMGERILGRVALDDI
LDPFSGQVLVKTNEEIDEAKVKLIENAGIDKVRIRSVLTCQAPRGICVECYGRDLARGRK
VNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRRAEQSTLENRNAGLVKFVNVNTAQK
KDGTLIVMNRNGEILVTDEQGRERERYQVVYGAKLNVKEGQRVEANTLLAEWDPYSMPII
TEVAGRVKYGDLVDGVTISEQVDEVTGLARKVVIASKDPDARPRLSIKGADGQTRKLLHS
DADARYMLPEGANIVVTDGDEVDAGEILAKMPRETTKTKDITGGLPRVAELFEARKPKEH
AVISEIDGVVAFGKDTKGKRKVVITPEVDGKLRPDLAKEYLIGKGKHISVHTGDRVRAGE
ALMDGAANPHDILRVLGEKELARYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRIME
VGDTSFLADEHVEKFVFEEENEKVMRDGGKPAQGEPLLLGITKASLSTESFISASSFQET
TKVLTEAAISGKVDYLRGLKENVIMGRLIPAGTGLGAYKHLDIEVETPVDAVEQAEEALA
VAGGEE
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggacatcttcaatttcttcgagaagcccaaggacccgctgtcgttctcggcgatc
cgcatctcgctggccagcccggacaagatccggcagtggtcgcacggcgaggtgaagaag
ccggagaccatcaactaccgcaccttcaagccggagcgggacggcctcttctgcgccaag
atcttcggcccggtgaaggactacgagtgcaactgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgagaagtgcggcgtcgaggtgatccagtcgaaggtccgccgcgag
cggctcggccacatcacgctcgccaccccggtggcgcacatctggttcctcaagagcctg
ccgtcgcgcatcggcaacctgctcgacatcacgctcaaggacctcgagaaggtcctctac
tgcgagagctacatcgtcctcgatccgaaggagaccaccctcgtcaagggtgagctcctc
tccgaggagcgctacggcaaggcgcaggaggagttcggcgacgacggcttcgtggccggc
atgggcggcgaggcggtgctcgagctcctccggggcatcgacatcatcaacctctccgag
cagctccggaaggagatgaaggaggccaccagcgacgccaagcggaagaagatcgccaag
cggctcaaggtggtggacgccttccgcgagtcgggcaacaagcccgactggatgatgctc
gaggtgatcccggtgatcccgccggatctccgcccgctggtcccgctcgacggcggccgc
ttcgcgacctccgacctgaacgacctctaccggcgcgtcatcaaccgcaacaaccgcctg
aagcggctccaggagctcaacgcccccgacatcatcatccgcaacgagaagcggatgctg
caggaggcggtggacgcgctcttcgacaacggccgccgcggcaagaccatcaccggcccg
aacaagcgcccgctcaagtccctcagcgacatgctgaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactactcgggccgctcggtcatcgtggtcggcccg
gagctcaagctgcaccagtgcggcctgccgaagatcatggccctcgagctcttcaagccg
ttcatctacaacaagctcgaagagaagggctacgtcaccaccatcaagagcgccaagaag
atggtggagaaggagcgccccgaggtctgggacatcctcgacgacgtgatccgcgagcac
ccggtgctcctcaaccgcgccccgaccctgcaccgcctcggcatccaggcgttcgagccg
gtcctcatcgagggcaaggcgatccagctgcacccgctcgtctgcaccgccttcaacgcc
gacttcgacggcgatcagatggccgtgcacgtgccgctgtccatcgaggcccagatggag
gcccgcgtgctcatgatgagcacgaacaacatcctgtcgccggcgcacggcaagccgatc
atcgtgccgagccaggacatcgtcctcggcatctactacatgacccgggagcgggccttc
gcgaagggggagggcaagttcttcgccagccccgacgaggtccgcgccgcgtacgatcag
ggcgaggtcgccctgcaggccaaggtcaccgtccgcatggacggccagcgggtcgagacc
accaccggccgcgtgctgctctacgacatcgtgccgaagcagctgcccttcagctccatc
aacaaggtgatggacaagaagcagctccagaacctcatcgacctcacctaccgcctctgc
ggcgagaaggagacggtgctcctcgcggaccgcgtccgctcgatgggctacggcaacgcg
accaaggccggcatctcgatcgcgctgtcgaacatgatcatcccgaagaagaagcaggag
ctgctcgggcgcgccaccaaggaggtcgacgacatccacgcgcagtacgccgagggcctc
atcaccttcggcgagcgctacaacaaggtcatcgacatctgggcgcaggtcaccgaggag
gtggccaaggagatgatggacgagatctccaccgaggtcgcggtggggatcggcaaggac
ggcaagcgcgaggagcgcaagcagccctcgttcaacgccatctacatcatggccgactcc
ggcgcccgcggctccgcccagcagatccgtcagctggccggcatgcgcggcctgatggcc
aagccttcgggcgagatcatcgagaccccgatcacggcgaacttccgcgagggcctcaac
gtcctccagtacttcatctcgacgcacggcgcccgcaagggcctcgccgacaccgcgctc
aagaccgccaactccggctacctgacgcggcgcctcgtggacgtggcgcaggacgccatc
atcaccgagtacgactgcggcgccatggacggcatcaccatgggctcgctcgtcgagggc
ggcgagatcatcgagccgatgggcgagcgcatcctcggccgcgtcgcgctcgacgacatc
ctcgatcccttcagcggccaggtgctggtgaagaccaacgaggagatcgacgaggccaag
gtcaagctcatcgagaacgccggcatcgacaaggtgcgcatccgctcggtgctcacctgc
caggcgcctcgcggcatctgcgtcgagtgctacggccgagacctggcgcgcgggcgcaag
gtcaacatcggcgaggcggtcggcgtcatcgccgcccagtcgatcggcgagccgggcacc
cagctcacgatgcggaccttccacatcggcggcgcggcctcccggcgcgccgagcagtcc
accctcgagaaccgcaacgccggcctcgtgaagttcgtcaacgtgaacaccgcccagaag
aaggacgggacgctcatcgtgatgaaccgcaacggcgagatcctggtcaccgacgagcag
ggtcgcgagcgcgagcgctaccaggtggtgtacggcgccaagctcaacgtcaaggagggc
cagcgcgtcgaggccaacacgctgctcgccgagtgggacccgtactcgatgccgatcatc
accgaggtggccggccgcgtgaagtacggcgacctcgtggacggcgtgaccatctccgag
caggtggacgaggtcaccggcctcgcccgcaaggtcgtcatcgcgtcgaaggacccggac
gcccgcccgcgcctctccatcaagggggccgacggccagacccggaagctgctgcactcc
gacgccgacgcccgctacatgctgcccgagggcgccaacatcgtggtgaccgacggcgac
gaggtggacgccggcgagatcctcgcgaagatgccgcgcgagaccaccaagacgaaggac
atcaccggcggtctcccccgcgtcgcggagctcttcgaggcccgcaagccgaaggagcac
gcggtcatctccgagatcgacggcgtggtggccttcggcaaggacaccaagggcaagcgc
aaggtggtcatcacgcccgaggtggacggcaagctgcggcccgacctcgccaaggagtac
ctgatcggcaagggcaagcacatcagcgtccacaccggtgaccgcgtccgcgcgggcgag
gcgctcatggacggcgccgccaacccgcacgacatcctgcgggtgctgggcgagaaggag
ctggcgcgctacctcgtggacgaggtccaggaggtctaccggctccagggcgtgaagatc
aacgacaagcacatcgagaccatcgtgcgccagatgctgcgccgcgtgcgcatcatggag
gtcggcgacacgagcttcctcgccgacgagcacgtcgagaagttcgtcttcgaggaggag
aacgagaaggtgatgcgcgacggcgggaagccggcgcagggcgagccgctgctgctcggc
atcaccaaggcctcgctctcgaccgagtcgttcatctcggcctcgtcgttccaggagacc
accaaggtgctgaccgaggccgccatcagcggcaaggtcgactacctgcggggactgaag
gagaacgtcatcatgggccggctcatcccggccggcaccggcctcggcgcctacaagcac
ctcgacatcgaggtggagacgccggtggacgcggtcgagcaggcggaggaagccctggcc
gtcgcgggcggcgaggagtag
DBGET
integrated database retrieval system
