Anaeromyxobacter paludicola: AMPC_12440
Help
Entry
AMPC_12440 CDS
T08525
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
apau
Anaeromyxobacter paludicola
Pathway
apau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMPC_12440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apau03019
]
AMPC_12440
03009 Ribosome biogenesis [BR:
apau03009
]
AMPC_12440
Enzymes [BR:
apau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMPC_12440
Messenger RNA biogenesis [BR:
apau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMPC_12440
Ribosome biogenesis [BR:
apau03009
]
Prokaryotic type
rRNA helicases
AMPC_12440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
DbpA
Motif
Other DBs
NCBI-ProteinID:
BDG08131
LinkDB
All DBs
Position
complement(1361141..1363081)
Genome browser
AA seq
646 aa
AA seq
DB search
MEDQNIPAGAEAPASEYVSQASFDDLGLSEELRRAIAEKGYVQPTPVQARTARPILDGKD
VIVRSKTGTGKTAAFGIPILEKVPGGRRQPSALVMCPTRELALQVAEELAGLAKHKDLTV
LAVYGGTGMGEQLDKLRAGAEIIVGTPGRIQDHIQRGTLKLDHVLVSCLDEADEMLDMGF
YEDVTRILDRLPDDCQQLLFSATVPADIEQIIQKYLTSPETILLSGDEYRVDNIRNVIYP
TVDAYPKPRNLLYMIEAEEPESAIVFCNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERE
RVMAKVKKGELRFMVATDIAARGIDISDLTHVINYSLPEDPAVYLHRVGRTGRIGKKGTA
VSLVSGGEMMTLKALKSKYAIDFEEKALPTPEEARRTWLDRHVAQLKDGMSASIFEAFIP
LAQELKSRQDGEWLMAYALKSFFSHLHMEKVQALQKAEHKKEEHERKASGEEPPHEARER
GPRRERRDGERGGRERREGRGRGERGERKGREHREDRERRERAPSVPGTAAAATPDRDAA
APEPGVREVSIAAGEGAPVAAEPRQPARGKVFLKLGEKDGADEAKVRAAVGALAPDLQLL
GVEVRGSHSYLLVQPEAVEGAVAALDGKEFEGVKLGAEKARRRRSR
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccagaatatccccgcgggcgccgaggcgcccgcgtccgagtacgtttcgcag
gcctccttcgacgacctcgggctgtccgaggagctccgccgcgccatcgcggagaagggc
tacgtccagcccacgccggtgcaggcccgcaccgcccgccccatcctcgacggcaaggac
gtcatcgtccggtccaagaccggcacgggcaagaccgccgcgttcggcatccccatcctg
gagaaggtgccgggcggccggcggcagccctccgcgctcgtgatgtgccccacgcgcgag
ctggcgctccaggtcgccgaggagctggccggcctcgcgaagcacaaggacctcaccgtc
ctcgcggtctacggtggcaccggcatgggcgagcagctcgacaagctccgggccggcgcc
gagatcatcgtcggcaccccgggccggatccaggaccacatccagcgcggcacgctcaag
ctcgaccacgtgctcgtctcctgcctcgacgaggccgacgagatgctcgacatgggcttc
tacgaggacgtgacgcgcatcctcgatcggctgcccgacgactgccagcagctgctcttc
tcggccaccgtcccggccgacatcgagcagatcatccagaagtacctgacgagcccggag
accatcctcctctcgggcgacgagtaccgggtggacaacatccggaacgtcatctacccc
accgtggacgcctacccgaagccgcgcaacctcctctacatgatcgaggcggaggagccg
gagtcggccatcgtgttctgcaacacccgcagcgacacctcgctggtcacggcggtgctg
aaccggaacggctacgacgccgagctcctgaacggggacctgccgcagaaggagcgcgag
cgggtgatggccaaggtgaagaagggcgagctgcgcttcatggtggcgaccgacatcgcc
gcccgcggcatcgacatctccgacctcacccacgtcatcaactactcgctcccggaggac
ccggccgtctacctgcaccgggtcggccggaccgggcgcatcggcaagaagggcaccgcc
gtgtcgctggtctcgggcggggagatgatgaccctcaaggcgctcaagtcgaagtacgcc
atcgacttcgaggagaaggcgctgcccacccccgaggaggcgcggcgcacctggctcgac
cgccacgtggcccagctcaaggacggcatgagcgcctcgatcttcgaggccttcatcccc
ctcgcgcaggagctcaagtcgcggcaggacggcgagtggctcatggcctacgccctcaag
tccttcttctcgcacctgcacatggagaaggtgcaggcgctccagaaggcggagcacaag
aaggaggagcacgagcgcaaggcgtcgggcgaggagccgccgcacgaggcgcgcgagcgc
ggcccgcgccgggagcgcagggacggcgagcgcggcgggcgcgagcggcgcgagggccgc
gggcggggtgagcgcggcgagcggaaggggcgcgagcaccgcgaggatcgcgagcggcgc
gagcgggcgccgagcgtgccgggcaccgcggcggccgcgactcccgaccgggacgcggcg
gcgccggagcccggcgtgcgcgaggtgtccatcgcggcgggggagggcgccccggtcgcg
gcggagccgcgccagcccgcccgcgggaaggtcttcctgaagctcggcgagaaggacggc
gccgacgaggccaaggtccgcgcggcggtgggcgcgctggcgccggacctccagctcctc
ggagtcgaggtccgcggcagccacagctacctcctcgtgcagcccgaggcggtcgaggga
gccgtggcggcgctcgacggcaaggagttcgagggcgtcaagctcggcgccgagaaggcg
cggcggcggcggagcaggtag
DBGET
integrated database retrieval system
