Anaeromyxobacter paludicola: AMPC_35890
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Entry
AMPC_35890 CDS
T08525
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
apau
Anaeromyxobacter paludicola
Pathway
apau03030
DNA replication
apau03430
Mismatch repair
apau03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
apau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMPC_35890 (dnaE)
03430 Mismatch repair
AMPC_35890 (dnaE)
03440 Homologous recombination
AMPC_35890 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apau03032
]
AMPC_35890 (dnaE)
03400 DNA repair and recombination proteins [BR:
apau03400
]
AMPC_35890 (dnaE)
Enzymes [BR:
apau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AMPC_35890 (dnaE)
DNA replication proteins [BR:
apau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AMPC_35890 (dnaE)
DNA repair and recombination proteins [BR:
apau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AMPC_35890 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BDG10476
UniProt:
A0ABN6NBQ0
LinkDB
All DBs
Position
complement(4112701..4116321)
Genome browser
AA seq
1206 aa
AA seq
DB search
MSDFVHLHLHTLYSLLDGAIRIKDLIENVKKKGMTSVAVTDHGNLYGAVDFYKKAKDAGV
KPILGFEAYVAGEKGRKDRSERVGRHLILLAKDNEGWANLRYLSSMAFTEGFYYDPRIDK
ELLRGHAKGLVGMTACLAGEVPRLIRKGDMDGARAAAREYRDIFDPGSFFLEVQSNGMKE
QIEVNARLAELAESEGIPLVATADAHYVSRADAKAHEVLMCIASNKTFSDPKRLRHDTDG
LFITSADDMRQALPEYKEAIANTLRIADMCNVKLDLGKNFLPRFQLPDGLSEDDYIVKLA
REGLDRRFREVAGQYEVDRDLYRQRLEMELGVIKKMGFSGYFLIVQDFINWGKQHQVPVG
PGRGSGAGSIVAYALRITDLDPIRWHLLFERFLNPERVSMPDFDVDFCQNRRDEVIRYVT
DKYGRDNVGQIVTFGSLKARSVIRDVVRVMGLPFSEGDRIAKLVPDPVQGKTPPLKELLF
GTEKAAAEPRLKELYEKPTVVSTWTDAQGAQHQVTTKDVLDIAVALEGLNRQTGLHAAGV
VIADKPLWEYVPVSRDDDSGMLVSQFAKEEAEKAGLVKFDFLGLKTLTVIDDAIRLVRKN
HPDQAGLEASQIPLDDPAVYELISRGDTAGVFQMESSGFTEMVMKMKPSRFEDVIAAGAL
YRPGPLDQKLEDGRTMVDVYIDRKHGRDKVTYAHEKLAPILADTYGVIVYQEQVMQISQV
LAGYSLGRADLLRRAMGKKKAEEMAKERVGFMEGCRNLHVDETVAGGIFDLMEKFAAYGF
NKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVTHISEARADGIAVLPPDV
NESLAEFSALPSGEAGKKGRIRFGLGAVKGVGESAVQAVLAARGEGGPFKGLFDFCARID
PRKINKKVLEALVKCGAFDFEGLPRWKLFYGIDAALAAGSSAAADRASGQKSLFGGVAAA
AEVKPRWPEPGDPVGESTVEEWPERVRLAFEKEALGFYITGHPLQGHEKEVRRYGSVTAA
QVAQKRPGDRVTVVGVVSSLREKVNKEKGTRFGFFTLEDLSGTVEVICWGSRPAQGNRPA
QKGWADWELMVKSDEPIVIHGEVKQNVRDEENPRAEVQAADILPLALMRSQKTNEVALRI
DADRLDRDRATALKALLAKHPGNCPVTVRAIIPEESETTLRVPSRVTPADELLEAARRMG
FEVDLR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgacttcgtccacctgcacctgcacaccctctactccctgctcgacggggccatc
cgcatcaaggacctgatcgagaacgtgaagaagaaggggatgacctcggtcgcggtcacc
gaccacggcaacctctacggcgcggtggacttctacaagaaggcgaaggacgcgggcgtg
aagcccatcctcgggttcgaggcctacgtcgccggcgagaaggggcgcaaggaccgctcc
gagcgcgtcgggcgccacctgatcctgctcgcgaaggacaacgagggctgggcgaacctc
cgctacctctcctcgatggccttcaccgagggcttctactacgacccccgcatcgacaag
gagctgctgcgcgggcacgccaaggggctcgtcggcatgaccgcctgcctcgccggcgag
gtgccgcgcctcatccgcaagggcgacatggacggcgcgcgcgcggcggcgcgcgagtac
cgcgacatcttcgaccccggctcgttcttcctggaggtgcagtcgaacgggatgaaggag
cagatcgaggtgaacgcccggctcgccgagctggccgagtcggagggcatccccctcgtc
gccaccgccgacgcgcactacgtctcgcgcgccgacgccaaggcgcacgaggtgctgatg
tgcatcgcctccaacaagaccttcagcgacccgaagcggctccgccacgacaccgacggc
ctcttcatcaccagcgccgacgacatgcggcaggcgctcccggagtacaaggaggccatc
gccaacacgctgcgcatcgccgacatgtgcaacgtgaagctcgacctggggaagaacttc
ctcccccgcttccagctccccgacgggctctccgaggacgactacatcgtcaagctggcg
cgcgaggggctcgaccggcgcttccgggaggtcgccgggcagtacgaggtcgaccgcgac
ctctaccggcagcggctcgagatggagctcggcgtcatcaagaagatggggttctcgggc
tacttcctcatcgtccaggacttcatcaactgggggaagcagcaccaggtcccggtgggc
ccgggccgcggctcgggcgcgggctccatcgtcgcctacgcgctgcgcatcaccgacctc
gaccccatccgctggcacctcctcttcgagcgcttcctcaaccccgagcgcgtctcgatg
cccgacttcgacgtcgacttctgccagaaccggcgcgacgaggtgatccggtacgtcacc
gacaagtacgggcgcgacaacgtcgggcagatcgtcaccttcggctcgctcaaggcccgc
tcggtgatccgcgacgtggtccgggtgatggggctgcccttctcggagggcgaccggatc
gcgaagctcgtcccggatccggtgcagggcaagaccccgccgctcaaggagctgctcttc
ggcaccgagaaggcggcggccgagccgcggctcaaggagctgtacgagaagccgacggtg
gtctccacctggaccgacgcccagggcgcgcagcaccaggtcaccaccaaggacgtcctc
gacatcgcggtggcgctcgaggggctgaaccggcagaccgggctgcacgccgccggcgtg
gtcatcgccgacaagccgctctgggagtacgtcccggtctcccgcgacgacgactccggg
atgctggtctcgcagttcgccaaggaggaggcggagaaggccggcctggtgaagttcgac
ttcctcggcctcaagaccctcaccgtcatcgacgacgccatccggctggtccgcaagaac
cacccggaccaggccggcctggaggcgagccagatcccgctcgacgacccggcggtctac
gagctcatcagccgcggcgacaccgccggcgtcttccagatggagtcctccggcttcacc
gagatggtgatgaagatgaagccctcgcgcttcgaggacgtcatcgccgccggcgcgctc
taccggccggggccgctcgaccagaagctggaagacggccgcaccatggtggacgtctac
atcgaccgcaagcacgggcgcgacaaggtcacctacgcgcacgagaagctcgcgcccatc
ctggccgacacctacggcgtgatcgtctaccaggagcaggtgatgcagatctcccaggtg
ctggccggctacagcctcggccgcgccgatctgctccgccgcgccatgggcaagaagaag
gccgaggagatggccaaggagcgggtcggcttcatggagggctgccggaacctccacgtg
gacgagaccgtcgccggcggcatcttcgacctgatggagaagttcgccgcctacggcttc
aacaagtcgcactcggcggcctacggcctcctcaccgtccagaccgcctggctcaaggcc
cactacccggtggagttcatggccgcgctcatctcgagcgaggcctccaacaccgacaag
gtggtgacccacatctcggaggcgcgcgccgacgggatcgcggtgctcccgccggacgtc
aacgagtcgctggccgagttctcggccctgccctccggggaggcggggaagaaggggcgc
atccgcttcggcctgggcgcggtgaagggcgtcggcgagtcggcggtgcaggccgtcctc
gcggcgcgcggcgagggcgggccgttcaaggggctcttcgacttctgcgcccgcatcgac
ccccgcaagatcaacaagaaggtgctcgaggcgctcgtgaagtgcggcgccttcgacttc
gaggggctgccgcgctggaagctcttctacggcatcgacgcggcgctcgccgccggctcc
tcggccgccgccgaccgggccagcggccagaagagcctgttcggcggggtggccgccgcg
gccgaggtcaagccgcgctggccggagccgggcgacccggtgggcgagtccaccgtggag
gagtggccggagcgggtccggctcgccttcgagaaggaggcgctcggcttctacatcacc
ggccatccgctgcaggggcacgagaaggaggtgcgccgctacggctcggtcaccgccgcg
caggtggcccagaagcggcccggcgaccgggtcaccgtggtgggcgtggtctcgtcgctc
cgcgagaaggtgaacaaggagaaggggacgcgcttcggcttcttcacgctcgaggatctc
tcgggcacggtcgaggtgatctgctggggcagccgcccggcgcagggcaaccggccggcg
cagaagggctgggccgactgggagctgatggtgaagtcggacgagcccatcgtgatccac
ggcgaggtgaagcagaacgtccgcgacgaggagaacccgcgcgccgaggtgcaggccgcc
gacatcctgccgctcgcgctcatgcggtcccagaagaccaacgaggtggcgctccggatc
gacgccgaccggctcgaccgagaccgggccaccgcgctcaaggcgctcctcgcgaagcac
ccaggcaactgcccggtgaccgtccgagccatcatccccgaggagagcgagaccacgctg
cgggtgccgtcccgcgtcacgcccgccgacgagctcctcgaggcggcccgccgcatgggc
ttcgaggtggacctgcgctga
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