Candidatus Puniceispirillum marinum: SAR116_0227
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Entry
SAR116_0227 CDS
T01207
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apb
Candidatus Puniceispirillum marinum
Pathway
apb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAR116_0227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apb03400
]
SAR116_0227
Enzymes [BR:
apb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAR116_0227
DNA repair and recombination proteins [BR:
apb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAR116_0227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
AAA_30
MFD_D3
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADE38470
UniProt:
D5BPI8
LinkDB
All DBs
Position
240680..244156
Genome browser
AA seq
1158 aa
AA seq
DB search
MNFINKIELNSSLWGCPDGAHMLAVAALAEAKGQILFVARDDARLALMRDALARLAPSLD
ILVFPAWDCLPYDRLSPQGALVGQRIETLARLASEPAALTANTIVLTTVNAFLQRVPPQS
YFAESSLHITVGQTIEPSALATFLVNNAYLRTDTVRETGEFAVRGGIVDVFPPGHANPVR
LDFFGDDIETMRSFDPSNQRSIGKADRLTLHPVAEFRLNSQTVERFRTSYLATFGATASR
DALYESVSAERMHPGIEHWLPLFHTEMVRLTDYCPDWPIILDHEAQAACVVRFEQIADFY
EARADSGDDGSSPYRPLDSEALYLGADELEELSAKQHVCSLQRFAAPDGSGSHQDAGGRP
GLTFTTAMARGQSAVVEVVEAMQAEMTGQRRPIVIAAASEGAAVRLDELIGEQMGPGHVT
RIDSLNAAKPGGIYIIIWSLDAGFQSDQLLVIAEADIFGQRLSRPQSKRGKGDDFLREVS
ALETGDLVVHAEHGIGRYDGLVTINSAGGDHDCLHLVYHGGDKLYLPVENIELLSRYGSG
GSGSGGSGSDAQLDKLGGAAWQARVARIKGRVRIMAEQLIKIAAQRHTAKAEPLLATDGL
FAEFCDRFSFVETDDQLNAIQDVIDDLASGKASDRLICGDVGFGKTEVALRAAFIVAMAG
YQVALVAPTTLLARQHGKEFTERFAGFPLKLGVLSRMTSTSDAKQIREDLASGDVQVVIG
THALLAKSLSFNNLGLLIVDEEQHFGVGQKERLKEMRGDIHVLTLSATPIPRTLQMALSG
VREMSLIATPPVDRLAVRTFVGPWDGVVLREAILREMFRGGQIFVVCPRIDDLQRVYDRV
RKLVPDARILSAHGRMPAAELDDVMTKFADGEADILLSTNIIESGIDIPSANTMIIHRAD
MFGLSQLYQLRGRVGRGRQRAYAYLTSDPNRILTPQARRRLEVMQTLDTLGAGFTLASYD
MDIRGAGNLLGDEQSGHVREVGVELYQEMLRQAVDAAKAGDVKDDEDTVVEWTPQINLGL
EVRIPEAYVPDLTVRLSLYRRIAGLSDMSEIDAILAELVDRFGTMPDSVRNLFAVIEIKQ
LCKLSNVEKIDAGPKGLSIGFRDNQFANPEQLVGWIAAQQGRVQLRGDHKLIIKQTLPQA
SGRAPVCKGIVQELVALV
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcatcaataaaattgaattaaacagctcgttatggggctgtcctgatggtgcg
catatgctggcggtcgctgcacttgccgaagccaaggggcagattctatttgtggcacgt
gatgatgccaggctggctttgatgcgggatgcgctggcgcggctggcaccgtcattagat
attctggtgtttccggcgtgggactgtcttccctatgatcgtttatcaccccaaggtgcg
ctggttgggcaacggattgagacgttggcaagactggcgtcagagccggcagcattaacg
gcaaacaccatcgtgctgacaactgtaaatgcctttctgcaacgtgtaccaccacaaagt
tattttgcggaaagttcgcttcatatcactgttgggcagaccatcgagccatcagctttg
gcgacgtttctggtcaataatgcgtatctgcggactgacacggtgcgcgaaacaggtgaa
tttgctgtgcgagggggcattgttgatgtgtttccccctggccatgctaatccagttagg
cttgatttctttggcgatgacattgagacaatgcgtagttttgatccatcgaaccagcgc
agtattggcaaagcggatcgtttgaccttacatcctgtcgctgaattcaggttgaatagt
cagactgtggaacggtttcgtaccagctatctggcaacatttggcgccactgccagtcgt
gatgcgttgtatgagtcagtatcggcagaacgaatgcatcccggaatcgaacattggttg
ccgcttttccatactgagatggtgcgcttgactgattattgcccagactggccaatcatt
ctggatcatgaggctcaagccgcctgtgttgtacggtttgagcagatcgccgatttttat
gaggcgcgcgctgatagcggagatgatggaagcagcccctatcgcccgcttgatagtgag
gcgctttatcttggtgcagatgagctggaagagctttcggcaaaacaacatgtctgcagt
ctgcaacgctttgccgcccccgatggtagcggatcgcatcaggatgcaggcggccgaccc
gggctgacatttaccaccgctatggcgcgtgggcagagtgcggtagtcgaagttgtcgaa
gccatgcaggccgaaatgaccggtcagcgtcgcccaattgttatcgccgcggcaagtgaa
ggcgcggctgtccggctagacgaattgattggtgaacagatgggcccagggcatgtcacg
cgaatcgacagccttaatgcagcaaagccaggcggcatttatatcatcatctggtcactt
gatgccggctttcaaagtgatcagctactggttattgccgaagcggatatattcggccag
cgattatcgaggccacaatccaagcgtggtaaaggtgatgacttccttcgcgaggttagc
gcgcttgaaacaggcgatttggtggtacatgccgaacatggtatcggccgctatgatggt
ctggttaccatcaatagtgcaggcggcgatcatgactgtttgcatcttgtctatcatggt
ggcgataagctttatctaccggttgagaatattgaattactgtcacgttatggtagtggc
ggtagcggtagtggcggtagcggtagtgatgcacagctagataagcttggtggtgccgca
tggcaggcgcgcgttgcacgtatcaagggccgtgtcagaattatggccgaacagctgatc
aagattgctgcccagcggcacacggccaaggccgagcccttgctggctactgatgggctg
tttgctgaattttgtgaccgcttcagctttgtcgagacggatgaccaattgaatgccatt
caagatgtgattgatgatctggcttcaggtaaggcaagtgaccgtctgatctgcggtgac
gttggttttggtaagaccgaagtcgctttgcgcgcggcgtttattgtggcgatggcaggg
tatcaggttgcattggtagcccccacaacgcttttagcgcgccagcatggcaaggaattt
accgaacgctttgccggtttcccgcttaagctgggggttttgtcacgcatgacatcaaca
agtgatgccaagcagatcagagaggatcttgcgtcgggtgatgtgcaagtcgttatcggg
acgcatgctttgctggctaaatcactgtcattcaacaatcttggtttgctgattgttgat
gaggaacagcattttggcgttggtcagaaagaacgcctcaaggaaatgcgcggtgatata
catgtgctgactttatctgcaacgcctatcccgcgtaccttgcaaatggcgttatcgggt
gtccgtgaaatgtcattaatcgcgacaccaccagttgacaggttggcggtacgaaccttt
gttgggccatgggatggtgtcgtactgcgggaagccattctgcgtgagatgttccgtggc
ggtcagatatttgtcgtatgtccgcgaattgacgatttacaacgggtctatgaccgtgtg
cgcaaacttgtgccagatgcccgcatattgtcggcgcatgggcggatgcctgctgccgag
ctagatgatgtgatgacaaaattcgccgatggtgaggccgatatactgctttcaaccaat
atcattgagtctggtatcgatattccatcggcaaatacaatgattatccatcgggctgat
atgtttgggctttcgcaattgtaccaactgcggggacgtgtcgggcgtgggcgacagcgt
gcttatgcttatctgacatcggatccaaaccgcattctgacgccacaagcgcggcggcgg
ctggaggtgatgcaaacacttgatacattgggtgccggatttaccctagcatcttatgat
atggatatccgtggtgcgggcaatctgcttggcgatgagcagtcaggtcatgtgcgtgaa
gttggtgtggagctttatcaggaaatgcttcgccaagcggtcgatgccgcaaaagcaggt
gatgtaaaagacgatgaagatacggtagtcgaatggacgccgcagattaaccttgggctg
gaagtacgcatacccgaagcctatgtccctgatcttaccgtgcgtctgtcactttatcgt
cgtattgccgggttgagtgatatgtccgaaattgatgccattttggcagagcttgttgat
cggtttgggacgatgccggactcagtacgtaatctgtttgcggtgatcgagatcaagcaa
ttatgcaaattgtcgaatgttgaaaaaatcgatgcagggccaaaagggctttcaatcggt
ttccgtgacaatcaatttgccaatccagagcagcttgttggctggatcgcagcccaacag
gggcgagtacagttacgtggcgatcataaattaattatcaaacagacattgccgcaagcg
tctggacgtgcgccagtatgtaaagggattgtgcaagagctcgttgcgcttgtataa
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