Candidatus Puniceispirillum marinum: SAR116_0618
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Entry
SAR116_0618 CDS
T01207
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
apb
Candidatus Puniceispirillum marinum
Pathway
apb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAR116_0618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apb03019
]
SAR116_0618
03016 Transfer RNA biogenesis [BR:
apb03016
]
SAR116_0618
Enzymes [BR:
apb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SAR116_0618
Messenger RNA biogenesis [BR:
apb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAR116_0618
Transfer RNA biogenesis [BR:
apb03016
]
Prokaryotic type
tRNA degradation factors
SAR116_0618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
LexA_DNA_bind
GntR
Motif
Other DBs
NCBI-ProteinID:
ADE38861
UniProt:
D5BRG4
LinkDB
All DBs
Position
657622..659922
Genome browser
AA seq
766 aa
AA seq
DB search
MADQDNSDDKTITGLPTQQAITDYVNSCATPPTQREIARAFNIGQDYRAPLRRLLRSLSE
QGILARRDGRRIATPDQLPEVTVLELVSFDDNGDGMARVAGENSDDEADAPEIRVILSRK
AGRAPSVGQTILARLARVGPNLYEARIIKVLERQQKRLFGEVIASNKGFKLMPAERGKRD
AINLQTSSSAPCVAGDLVEAELLPSKGYLAKTARIIRNLGSSSNTGAFSALAIAEFNIRH
HFPDAVISEANALKTPPAKGRLDLRDTALVTIDGADAKDFDDAVFAEPTDTGGWRLLIAI
ADVSHYVRQGSALDKEARTRGNSVYLPDLVVPMLPEAISNDLCSLRPHEDRAAMVAEIFI
DNEGQRISHSIQRALIKSHARLTYDTVQAVFDGTLDEADADVPHGTLHALFGAWHALNID
RTAREPLALDLQERRVEFDDSNNAVGIALRKQSESQRLIEDFMIAANVAAADTLIAAKRP
CVFRVHDAPDPKKADSLHKLADAIGGKFTRGQVLQPHHFNKLLAHVKDTTDELMVNEAVL
RSQSKAVYDINNIGHFGLSLRNYAHFTSPIRRYADLLVHRALVDHAAKGKKAPVDGLLDM
PLEIMGEICTHISETEANAAGAERRSIDRFAAAFFESRINETMDAVIVAITGFGAFLRLD
DGKADGFLPLKNLPDDYYDLDASGQWLEGRHTGWTFGIGTELGVQIAEVNAVSGGILLRW
VSGGLSGDRPNRNSRMAHKKGENRSSAKAAKRSSHRKNKSSRRKSR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
gtggctgatcaagacaatagcgatgacaagactataaccgggctacccacgcaacaggcc
attactgattatgtgaatagctgtgctacccctcctacccagcgtgagattgcccgcgcg
ttcaatattggacaggactatcgcgcgcccttgcgacggcttttacgaagcctgagcgaa
cagggtattctggcgcgccgcgatggacgacgtatcgcaacgcctgatcaattacccgaa
gtcactgtgcttgaactcgtatcattcgacgataatggtgatggtatggcacgtgttgcc
ggtgaaaatagtgatgatgaagccgatgcccccgaaatacgtgtcatcctgagtcgcaaa
gcaggacgcgcgccatctgttggccagacaatcttagcgcgcctcgcccgggtcggcccc
aatctatatgaagcacgcattatcaaagttcttgaacgccagcaaaaaaggctgtttggc
gaggtcattgcatcaaataagggctttaagctcatgcctgccgaacgcggcaaacgcgac
gccattaatttacagacatcatcatcagcaccttgcgtagctggcgaccttgtcgaagcc
gaattactgccctcaaaagggtatctggcaaagaccgctagaatcattcgcaatcttgga
tcatccagtaatacaggcgcattcagcgcgctggcgattgctgaattcaacatacgccac
catttccctgatgctgtcatcagtgaagccaatgcgcttaagacaccacctgcgaaaggg
cggctagatttacgtgataccgcacttgtcaccattgacggtgccgatgccaaggatttt
gatgatgcggtctttgccgagccaactgacactggtggttggcggcttttgatcgctatc
gctgacgtatcacattacgtacggcaaggctccgcccttgataaggaagccagaacaagg
ggaaattctgtatatctgccagatttggtggtgcccatgttgcctgaagctatctcgaat
gatctatgctcattgcggccacatgaagatagagccgccatggtagccgagatatttatc
gataatgagggacaaaggattagtcattcaatacagcgcgccttgatcaaatctcatgct
cgtctgacctatgacacggtacaggccgtatttgatggcacgcttgatgaagctgatgcc
gacgtaccacacggcacattgcatgcgctgtttggcgcatggcatgcgttaaatattgac
cgcaccgcccgcgagccacttgcacttgatcttcaggaacgccgcgtcgagtttgatgac
agtaataatgctgttggcattgccctacgtaaacaaagcgagtcacaacgactgattgaa
gatttcatgatcgccgccaatgttgccgccgcagatacgttgatagctgccaaacgccca
tgcgtatttcgcgttcatgatgcacctgatcccaaaaaagcggatagtctgcacaaactg
gcagatgctattggtggtaaatttacccgtggacaggttttacaaccacatcatttcaac
aaattacttgcccatgttaaagacacaaccgatgaattgatggttaatgaagctgtatta
cgcagccaatctaaagctgtctatgatattaataacattggtcattttggtttatcccta
agaaattatgcccatttcacatcacctattcgccgctatgcagatttgctggttcaccgc
gcacttgtcgatcacgccgcaaaagggaaaaaggcaccggttgatgggcttttagatatg
ccgcttgagataatgggtgaaatttgcacgcatatttctgaaaccgaagcgaatgccgcc
ggagcagaacgacgaagtattgaccggttcgcagcggcattttttgaaagtcgcataaat
gaaacaatggatgctgtcattgttgccattactggctttggcgcctttttgcgtcttgat
gatggcaaggctgacggatttctgccgctaaaaaatctgcctgatgattattatgatctg
gacgcatcaggtcaatggctcgaagggcgtcataccggctggacattcggcatcggcacc
gaactgggcgttcagattgccgaggttaatgccgtttctggcggcattctgctacgctgg
gtcagcggcggattaagtggcgaccgcccaaaccgaaatagccgaatggcgcataaaaag
ggtgaaaaccgatcatcagcaaaagcggctaaacgatccagtcacagaaaaaacaaatca
agccgccgaaaaagccgatga
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