Candidatus Puniceispirillum marinum: SAR116_1261
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Entry
SAR116_1261 CDS
T01207
Name
(GenBank) UvrD/REP helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
apb
Candidatus Puniceispirillum marinum
Brite
KEGG Orthology (KO) [BR:
apb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apb03400
]
SAR116_1261
Enzymes [BR:
apb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAR116_1261
DNA repair and recombination proteins [BR:
apb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
SAR116_1261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
Viral_helicase1
AAA_12
AAA_30
DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADE39504
UniProt:
D5BTA7
LinkDB
All DBs
Position
complement(1380451..1383939)
Genome browser
AA seq
1162 aa
AA seq
DB search
MNDLIQRASIEQARASDPMASVFVSANAGTGKTKLLTDRVLRLLLSGAEADGILCVTYTR
AAAAEMRNRIYARLARWAVISTADLTKDLQAMGIVAPSQGNIRLARMLFAKILDNDNGPR
VETVHSFCQSILRRFPIEAGIAPNAKLADDAEQDRLKSIAKVAVMNSLDPAIQIAVATIA
NQSSEGQATEILTEFLRRVPALDDIDTLSRLQAHFRDDLDMPEADFVTQHIAEALAKIDD
EALRAVAVALQNAKTETQRDRGAAFFAWLALDDEMRIARLNLLVDALFTTKGPRADRNLS
NADIRAEYPPIVDVQRAVIDILTPILHMMATDRCRELTTALYIFGAAFQRHYQSLKESRG
LLDYDDLIAVTNRLLARSEAAQWVAWKLDNGIGHVLVDEAQDTSPAQWTLLLRLVESFFD
GSDMPVAASSIASDTADMDIAPRSVFAVGDFKQSIYSFQGADPKVLGENRTLLRNKAMAA
EIDFRALSLSVSFRSTAPILGLVNDLIPDLDGIEDFVSHDLARRHKGGFVEVWPIIDAPV
DEEKTEGFTPANIASMQGASAVAASHLARTLKSWIGKRPLPSSDNDHMPRKIMAGDILIL
LRKRDVFFEQVLVALQEQGVAVAGADRMRLVDQIEIQDLLALGDVALLPDDDLQLAALLK
SPLFGISEAQLFDLAHDRGSHSLFRQLMRYLGSNDPLGRIADRLEEWCRLVDGGSVFSFF
SKVLVDGGRDKFRARLGSSVDEALDHFLAVAQSYGESGGVSLTAFLAAVRAGGGDVKRDM
DAGNVDEVRVMTIHGAKGLEAPIVILPDMLRHSVPHSPLITGEDQRFIYWEAGSHLRPPF
LETARQKASDLRAEEDNRLLYVALTRARDGLVIGGWEKRNSRWLENSPYSRIKAYFTEHK
DVVEDVDGVLRHIAKTVSEADSVFPSMPDDDAAMRVPDIASEPADTSWLHHPAPDLPPDA
RPLRPSEPANLYAPHPLGFGVTDSRTQAMALTRGRLAHRLFEMLPTVPQDQRNTVADRMI
ATVDMLSPAQGAQLKNEVFTILNDPRFGNLFTPDALAEVPVTGMVRDRGVSGQIDRLFVG
DDSVIIADFKTGIANEDSPPETYQRQMALYAALIGEIFPNKPIVCWLIWTETARLQEITA
SMRALALARIFGDIKTVYNSFT
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatcttattcagcgtgccagcatagaacaggcgcgcgcatctgatccgatggca
tcggtctttgtctcggccaatgccggaacaggcaaaaccaaattattgactgaccgggtt
ctgcgtctgcttttgtcaggtgcagaagccgacggtattttatgtgttacctatacacgc
gcggcggcggcagaaatgcgcaaccgtatttatgcgcgtctggctcggtgggctgttatt
tcaacagctgatctgaccaaagatctgcaagcaatgggaattgttgcaccatcacaggga
aatattcgtctggcgcgcatgctgtttgccaagatacttgataatgacaatggcccacgt
gttgagacagtgcactcattttgccagtccattttgcgccgctttccgattgaagccggc
attgcgccaaatgcaaagctggcagacgatgccgaacaggatcgtcttaagtcaattgcc
aaagttgcggtgatgaacagcctagatcctgcaatacagatagccgtggcaactattgct
aaccagagttccgaaggacaagcgactgaaattctcaccgagttcttgcggcgtgtgcct
gcgcttgacgatatcgacaccttatcccgcttacaggcacatttccgtgatgatcttgat
atgcctgaggcggattttgtaacccagcatattgcagaggcattggcaaaaatcgatgat
gaggccttacgtgcggtggcagtggctttacagaatgctaaaaccgaaacccagcgcgat
cgtggtgccgcgttttttgcgtggttggcacttgatgacgaaatgcgcattgcgaggttg
aatttgctggttgatgcgctgttcacgacaaagggcccacgtgctgaccggaacctgtcc
aatgctgacatccgtgctgaatatcctcccattgtcgatgtccagcgtgcggtcattgat
attctgacccccattttacatatgatggcaacggatcggtgccgcgagttgaccacggca
ttatatatttttggggcagcgttccagcgtcattatcaaagcctgaaagaaagtcgtggt
ctgctcgattatgatgatttgatcgctgtgaccaaccgtctgcttgcccgaagcgaagct
gcacaatgggtggcgtggaaacttgacaatggtataggtcatgttctggtcgatgaagca
caagatacaagtcccgcgcaatggactttgttacttcgccttgttgagtcattctttgac
ggcagtgatatgcctgttgcggccagctctattgcttcggacactgcagatatggacatc
gcaccgcgcagtgtttttgctgttggtgactttaaacaatcgatctattcatttcagggc
gctgatccaaaggtgcttggcgagaaccgtacattgcttcgcaataaggcgatggcggct
gagattgattttcgggctttatctttatcggtgtcgttccggtcaacggcacccattctt
ggtttggtcaatgatttgatccctgaccttgacggtattgaggattttgtaagccatgat
ctcgcgcgtcgtcataaaggtggttttgtcgaagtctggcctatcattgacgcgccggtt
gatgaggaaaagacagaaggtttcacccctgcaaatattgcgtcgatgcaaggcgcctct
gctgtggcagcaagccatcttgcgcgcacgttaaaatcctggattggcaaacgacctttg
ccatcgtcggacaatgatcatatgccaagaaagattatggctggtgatatcctcatcctg
cttcgcaaacgcgatgttttctttgagcaggtgctggttgcgcttcaagaacaaggtgtt
gccgttgcaggtgctgacaggatgcggcttgtggatcagattgaaattcaggatttgctg
gcattgggtgacgttgcgcttttgcctgacgatgatttacagcttgccgccttattgaaa
tcgcctttatttggcatcagtgaagcgcagttgtttgatcttgcccatgaccgtggatcg
cacagtctattccgacagcttatgcgctatctgggaagcaatgatccgcttggtcgtatt
gccgaccgtttggaagagtggtgcagattggttgatggggggtcggttttttctttcttc
agcaaggttcttgttgatggtggccgcgataaattccgcgcccgtcttggttcgtcggtt
gatgaggcgcttgaccattttctggcagtcgcccaaagctatggagagtctggaggtgtt
tcgctaacagcctttttggcagcggttcgtgctggtggcggtgatgtaaagcgcgatatg
gatgctggtaatgtggatgaggtgcgtgtcatgaccattcacggtgccaagggacttgaa
gccccaatcgttatcctgccagatatgttgcggcatagcgtgccccattccccgctgata
acaggcgaagatcaacgctttatctattgggaagctggcagtcatttgcggccaccattt
cttgaaacggcgcgtcagaaagcaagcgacctgcgtgccgaagaagataaccgcctcctt
tatgtggcattaacgcgagcccgtgatgggttggtaataggcggctgggaaaaacgcaat
tcgcgctggcttgaaaacagtccctacagccggataaaggcatattttacagaacataaa
gacgttgtcgaagacgtggatggcgtgttgcgtcatatcgccaagactgtttcagaggct
gattctgttttcccttcaatgcctgatgatgacgcagctatgcgcgttccagatatagcc
agtgaaccggctgacacaagctggcttcatcatcctgcacccgatttaccacctgatgct
cgtccgttgcgaccatcagagcctgccaatctttatgcgccgcatccattgggatttggc
gtaacagatagccgaacacaagctatggcattgacccggggacgtctggcgcaccgtcta
tttgagatgttgccgacagtacctcaggatcagcgcaacactgttgcagatcgcatgatt
gcaacggttgatatgctatcgcctgctcagggtgcgcagcttaaaaatgaggttttcaca
attttgaatgatccacgctttggcaatttgtttacccctgatgcgcttgccgaagtacca
gtgactggtatggtgcgtgatcgcggtgtgtctggacagattgatcgcctgtttgtcggt
gatgacagcgtcattattgcagatttcaaaaccggtattgcgaatgaagattcccctccc
gaaacatatcaacgccaaatggcactttatgcggctttgataggagaaatttttcctaat
aagccaattgtgtgctggctcatttggacggaaacagctaggcttcaggaaataacagcg
tcaatgcgcgctttggcgcttgcgcgaatatttggtgacattaagacagtttataactca
ttcacatag
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