Candidatus Puniceispirillum marinum: SAR116_1262
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Entry
SAR116_1262 CDS
T01207
Name
(GenBank) Inactivated superfamily I helicase
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
apb
Candidatus Puniceispirillum marinum
Brite
KEGG Orthology (KO) [BR:
apb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apb03400
]
SAR116_1262
Enzymes [BR:
apb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAR116_1262
DNA repair and recombination proteins [BR:
apb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
SAR116_1262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Histidinol_dh
Motif
Other DBs
NCBI-ProteinID:
ADE39505
UniProt:
D5BTA8
LinkDB
All DBs
Position
complement(1383932..1386940)
Genome browser
AA seq
1002 aa
AA seq
DB search
MRVSSVYNIPAGTPFAKELAKGVIQLASSPTDLARAIVMVPSQRAAQALRSAFLDVTKGQ
AALLPRMIPIGDLADDVADVFPELYGGADTAMLPPAISPLRRQMMLAKLLGGFKLGGQTP
TFPQAMMLAHTLGQLLDQLYNVDANPDQLRDMLPERYSAHWQDIIKLLTILVDNWPAILA
SENVMDGVDRRNRLIRARVKAWQDNPPETLIVIAGSTGSIIATRELIRCVSNLPNGHVVL
PGLDSGAVPEWDAISHDSGHPQYQLAQLLHFMDITPLDVQNWVSNPESQPATSARRDLMR
EVFRPAPTTATWRQLSEDRPDLGRDALQGLQVIETHDRRAEAGLIAADLRATLEHEDQTA
ALITPDRHLAEAVIAELARWKITIDDSAGTTLLTHRAGAFLQLLVEAMQENFAPLALLGV
LKHPCAAGGMAQADFRAKVRHIEKLVLRGQRPAPGLEGLAIAIGDDKDLRDFIAIHIAVP
FTPLVDAWQAPAPTMASLARGLGQTAEMMAAQTMCIPSDGPDTETRVADKNDGALHLWDN
QGGKAAADLLKNLVEHGHDQAVNATDFAQTLVQIMQDITVHAVQQSHPRLAILGAVESRM
QTADHLIIAGFNEGNWPPQPQTDPWMNSDMRKAVGLPPHNWRTSLSAHDVYMAICNPKVT
ITRAQRQNDAATIPSRWLQRMDVVLSALGIAKALDRGDEKFEWLAILNPKTIPNRIKRPA
PKPPLSARPRKFSATEIDMWINDPYALYAKKILKLRQLDDIDRPPDAALRGTLFHNVLAD
FTRTFPSGSLPDTAYQDLLAIGKTHFADQWATPDIRYFWWPRFEMVAGWIIETEKQRRDD
LAFIHAEKKGSTILTGPAGPVELSARADRLEKTKDGTWHIIDYKTGIVPSKSKVASGRAT
QLLVEALIAWDGGYDDKPGCDIAKMQYWKLSGRKNKIGDIYDVLPDDGSPENTRDMMQSL
ITLFDDPEATYPAEPNIKFKLSYNPYRHLARISEWQQEGHDE
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtttcgtctgtctataatattccggcaggaaccccctttgcaaaagaacttgcc
aagggggttattcagctagcatctagcccaaccgatctggcgcgtgccattgtcatggtg
ccatcccagcgggcagcacaggcgttgcgaagtgcttttctcgatgtcaccaagggacag
gcagcattattgccgcgcatgataccgattggcgatcttgcagatgatgtggctgacgtg
tttccagagctttatgggggtgcagacaccgcgatgttgccgccggcgatttcgcctttg
cgccgccagatgatgttggctaaattgctgggtgggttcaaacttggtggccagacacca
accttcccgcaagctatgatgcttgcccatacgcttggtcaattgcttgatcaactttat
aatgttgatgccaaccccgatcagttgcgtgacatgctgcccgaacgttattcggcacat
tggcaggatatcatcaaactcctaactattctggttgataactggccagcaattctagct
tcagagaatgttatggatggtgtcgatcggcgtaaccggctgatccgcgcgcgcgtaaaa
gcatggcaggataacccacctgagactctgatcgtcattgctggatcaacaggttcgatc
attgcgacgcgtgaacttattcgttgtgtatctaatttgccgaatggtcatgttgttttg
cctggcttggatagtggtgcggtgcctgaatgggacgcaattagccatgatagcggccat
ccgcaatatcagcttgcccagcttttgcatttcatggatatcacaccattggatgtccag
aactgggtgtccaatcccgaaagtcagccagcaacaagtgcgcggcgtgatctgatgcgt
gaagtattccgccccgcaccaacgacggcaacatggcggcaattgtccgaggacaggccc
gatcttggccgtgatgctttgcaagggctacaagttatcgaaacgcatgatcggcgtgcc
gaagcaggattgatcgcggctgacctgcgcgcaacgcttgagcatgaagaccagacggca
gcactgattacgccggaccgccatctggccgaggcggttatcgctgaactggcgcgctgg
aaaattacaattgatgattcggcgggcacaacccttcttacccatcgggcaggggcgttt
ttgcagttgctggtggaggcgatgcaggaaaattttgcgccattggcattgcttggtgtg
cttaagcatccttgtgcggcaggtggcatggcacaggctgattttcgcgctaaagtcaga
catattgaaaaactggttctgcggggccaacggccagcccccggtctagaaggtttagcc
attgccattggtgatgataaagatttgcgggattttatcgcgatccatatcgcggttccc
tttaccccccttgttgatgcgtggcaggcgccagccccaaccatggcaagccttgcccgt
ggactaggccagaccgccgaaatgatggcagcgcagactatgtgtattccatctgatgga
cccgatacagaaacacgagtcgccgataagaatgacggtgctcttcatctatgggacaat
caaggcggcaaggccgctgccgatctgttgaaaaacctggtcgagcatgggcatgatcaa
gcggttaatgccacggattttgcgcaaacgttagtacaaatcatgcaggacataacagtg
catgctgtccagcagtcacatccaaggctggctattctgggagcggtagaatcgcggatg
caaaccgccgatcatttgataattgcgggcttcaatgaaggtaactggccaccgcaaccg
caaactgatccttggatgaacagcgatatgcgcaaagccgttggtttgccgccacataac
tggcgtaccagcctaagtgcgcatgatgtctatatggcaatttgcaacccaaaggtcacg
atcacccgtgcgcaacgccagaatgatgcggcgacgatcccaagtcgctggctacagcgg
atggatgttgtgctatcggctcttggcattgccaaagcgcttgatcgtggtgatgaaaag
tttgaatggcttgcgatattaaatcctaaaacgataccaaaccgtataaagcgtccagcg
ccaaaaccgccactaagcgcgcgcccacgaaagttttcggctaccgagatcgatatgtgg
atcaatgatccatacgcgctttatgccaagaagattctaaagcttcgtcaacttgacgat
attgaccgtccaccagatgcggctttgcgcggcacattatttcataatgtgcttgccgat
tttacccgcacttttccttctgggtctttgcctgataccgcgtatcaagacttgctggcc
ataggtaaaacgcattttgccgatcaatgggcaacgcctgatatccgttatttctggtgg
ccccggtttgagatggttgcaggttggattattgaaacagaaaagcagcgccgtgatgat
cttgctttcatacatgccgaaaagaaaggcagcaccatattgaccgggccggctggcccc
gttgaattatcggcgcgtgctgatcggttggaaaaaaccaaggatggtacatggcacata
attgattataaaaccggtattgtcccatcaaaaagcaaggttgcttcaggtcgcgctacc
cagcttctggtcgaagccttgatcgcatgggatggcggttatgatgataagccaggttgc
gacattgccaagatgcaatattggaaactaagtggccgtaaaaacaagattggtgatatt
tacgatgtgttgcctgatgatgggtcgccggaaaacacccgcgacatgatgcagtcgctg
atcacgctgtttgatgatcccgaagccacctatccagctgagccaaacatcaaattcaag
ctatcctataatccttaccggcatctggcgcggataagcgaatggcaacaggaggggcat
gatgaatga
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