Candidatus Puniceispirillum marinum: SAR116_1489
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Entry
SAR116_1489 CDS
T01207
Name
(GenBank) replication factor C conserved domain:ATP/GTP-binding site motif A
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
apb
Candidatus Puniceispirillum marinum
Pathway
apb03030
DNA replication
apb03430
Mismatch repair
apb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
apb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAR116_1489
03430 Mismatch repair
SAR116_1489
03440 Homologous recombination
SAR116_1489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apb03032
]
SAR116_1489
03400 DNA repair and recombination proteins [BR:
apb03400
]
SAR116_1489
Enzymes [BR:
apb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAR116_1489
DNA replication proteins [BR:
apb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAR116_1489
DNA repair and recombination proteins [BR:
apb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAR116_1489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DUF3646
DNAX_ATPase_lid
AAA
AAA_22
AAA_30
AAA_5
AAA_14
AAA_assoc_2
RCF1-5-like_lid
AAA_18
RuvB_N
AAA_19
AAA_2
Cdc6_lid
Glyco_tranf_2_5
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADE39732
UniProt:
D5BTY5
LinkDB
All DBs
Position
1644734..1646596
Genome browser
AA seq
620 aa
AA seq
DB search
MNETATTAYRVLARKYRPETFSALIGQDALVRTLGNALSLGRLAHAFVLTGVRGVGKTSA
ARLLAKGLNCIGPDGNGAATLEPCGTCEPCTAIAAGRHVDVLEIDAASHTGVDDAREIIE
AVNYRPVSARFKIYIIDEVHMMSKSAFNALLKTLEEPPDAVKFIFATTEIRKVPVTILSR
CQRYDLRRVPATLLASHLEMICGKEDIKAEAGALAAIASAAEGSVRDALSLLDQAAAMTA
DTLSAESVSDMLGRPGRAEALALLKSVLANDVASALASFNDIYQRGAEPEMLIADLLDIV
HSASLCATGGSSATLIEGERASIEELATLGIAKLGRAWQILLKGHGELNAAPNPANACEM
LLIRLAHAAQMPSPDEILRALPEATAGNAATISTASSSPSASASPTSTDIPAPASTATPT
TTMSTSPTGTPTGTPTSTMSGAPSTNVAIQHQPDQQTVPAQNTDADADAAPDRLAANDTP
PLNTLADIATLAEDKGEMLLAALIRNHVRLVALQPGLLEIALSGKPPEKFLGDLAQHLRH
WTGARWLVSLSDETAGKTLAEAKADAAAVRLDTIAKTPLVAKIISVFPGATIEDISAIDA
PVTDPDKDTDTDTYNEEDPD
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaacggccactacagcctaccgtgttctggcacgcaaataccgtcccgagacg
ttttcggcgttgatcggacaggatgcgctggtacgcactctcggcaatgctttatcgctt
ggtcgtctggcacatgcctttgtcctgactggcgtgcgcggcgttggcaaaacctcggcc
gcacgtctgcttgccaaaggcctgaactgtatagggcctgatggaaatggcgctgcgacg
ctagagccatgcggcacatgcgagccttgcacggcgattgctgctggtcgccatgttgat
gttctggaaattgatgccgccagccatacgggcgttgatgatgctcgtgaaattatcgaa
gcggttaattaccggcccgtatcggcacgtttcaaaatctatatcatcgacgaagttcat
atgatgtccaaaagcgcctttaacgcgcttctcaaaacactcgaagagccgcccgatgcg
gtaaaattcatttttgccactaccgaaatccgcaaagtgccagtgaccatcttgtcacgc
tgtcagcgttatgatctgcgccgtgtgcctgcgactttgctggcctcgcacctagagatg
atctgcggcaaggaagacattaaagccgaagctggtgcgctagccgccattgctagcgcc
gccgagggatcggttcgtgacgccctgtccttgctggatcaggccgccgccatgacagcc
gatacattatctgccgaatcggtttctgacatgctgggccgacccggacgtgccgaggct
ttagccttgttaaaatcggttttggcaaatgacgtcgccagcgcgctagcatcctttaac
gatatctatcaacgtggcgccgagcctgaaatgctgatcgctgatttgcttgatatcgtc
catagtgccagcctatgcgcaaccggcggttccagcgccacattgatcgagggtgaacgc
gcgtctatcgaagaactcgccacacttggtatcgccaagctaggacgtgcatggcaaatt
ttactcaaaggccatggtgaactgaatgccgcgccaaaccctgccaatgcttgtgaaatg
ctattgatacgtctggcgcatgctgcgcagatgccaagccctgatgaaattctgcgcgcg
ttacccgaggccactgctggcaatgcggcgacaatatccaccgcatcatcaagcccctct
gccagtgcctcgcccacatctacggacataccagcacccgcatcaacagcgacgccaaca
accactatgtccaccagcccaactggcaccccaactggcacaccaacaagcacaatgtca
ggcgccccatcaaccaatgttgccatccagcaccagcctgaccagcaaacggtgccagcc
cagaataccgatgccgatgctgatgccgcgccagatcgtctggcagcaaacgacacaccg
ccattgaacacgcttgccgatattgccactttggccgaagataaaggcgagatgcttttg
gcggcattgatccgcaatcatgtgcggcttgtcgcattgcaacccggattattggaaatc
gccttgtcaggcaaaccgccagaaaaatttcttggcgaccttgcccagcatttacggcat
tggactggcgcgcgctggctggtgtctttatctgacgagactgctggcaaaacccttgcc
gaagccaaggctgatgccgcggcagtacgtcttgatacgatcgccaaaacgccgcttgtt
gccaaaattatatctgtatttcctggcgcaacgatcgaagatatcagtgccattgatgca
cccgtcaccgatccggacaaagacaccgacaccgacacctataatgaagaggatcctgac
tga
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