Candidatus Puniceispirillum marinum: SAR116_2314
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Entry
SAR116_2314 CDS
T01207
Name
(GenBank) RNA polymerase, sigma 32 subunit, RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
apb
Candidatus Puniceispirillum marinum
Brite
KEGG Orthology (KO) [BR:
apb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apb03021
]
SAR116_2314
Transcription machinery [BR:
apb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAR116_2314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
HTH_11
Sigma70_r1_2
UCR_14kD
Sigma70_r3
GntR
HTH_25
PgaD
GvpK
Motif
Other DBs
NCBI-ProteinID:
ADE40557
UniProt:
D5BPQ5
LinkDB
All DBs
Position
complement(2529866..2530804)
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AA seq
312 aa
AA seq
DB search
MATATSKPRSTMPAISPDGNLSRYLEQIRAFPMLEPKQEYMLAKAWKEKGDVESAHQLVT
SHLRLVAKIAMGYRGYGLPVADLISEGNLGMMHAVKKFEPEKGFRLATYAMWWIKAAIQE
YILRSWSLVKIGTTAGQKKLFFNLRRIKGQIQAIDEGDLKPEQVTHIADELNVTEAEVMS
MNQRMAGNDRSLNVPLSRDGEGTGEWQDWLEDDTVDQETSFAEHEEYSARANLMMDAMKG
LNEREQRILQARRLAEPPLTLEDLAGEFNVSRERIRQIEVRAFEKLQKAVRDKANELKLL
PTQDVAEPALLG
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgcaacatcgaagcccagatcaacgatgcccgcaatcagccccgatggcaat
ctgtcgcgctatcttgaacagatacgtgcgtttcccatgctggagccaaagcaggaatat
atgctggcgaaagcgtggaaagaaaaaggtgacgttgaatcggcgcatcagctggtgacc
agccatttgcgccttgttgccaagattgcgatgggctatcgcggttatggcttgcctgtt
gccgacctgatttccgaaggcaatctgggcatgatgcacgcggtcaagaaattcgagccc
gaaaagggattccgtctggctacctatgccatgtggtggatcaaggcggcgattcaggaa
tatatcctgcgcagctggtcgctggtaaaaatcggcaccacggccggacagaaaaagctg
tttttcaatctgcgccgcatcaagggccagattcaggcgattgatgaaggtgatctgaaa
cccgaacaggtcacccatatcgccgatgaactgaatgtgaccgaagccgaagtcatgtcg
atgaaccagcgcatggcgggtaatgaccggtcgctgaatgtgccgcttagccgtgatggt
gaaggcactggcgaatggcaggattggctggaagatgacacggtcgatcaggaaaccagc
tttgccgagcatgaagaatattcggccagagccaatctgatgatggatgcgatgaagggg
ttgaacgaacgcgaacagcgcattcttcaggcacgccgtcttgccgagccgcctttgacg
ctggaagaccttgcgggtgaatttaatgtcagccgcgaacgtatccgccagatcgaagtg
cgcgcctttgaaaaattgcaaaaggccgtgcgtgacaaggccaatgagctgaaattacta
cccactcaggatgtcgccgaacccgctttattggggtaa
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