Candidatus Puniceispirillum marinum: SAR116_2415
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Entry
SAR116_2415 CDS
T01207
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
apb
Candidatus Puniceispirillum marinum
Pathway
apb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAR116_2415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apb03021
]
SAR116_2415
03400 DNA repair and recombination proteins [BR:
apb03400
]
SAR116_2415
Enzymes [BR:
apb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAR116_2415
Transcription machinery [BR:
apb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAR116_2415
DNA repair and recombination proteins [BR:
apb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAR116_2415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ADE40658
UniProt:
D5BQE0
LinkDB
All DBs
Position
2624003..2625019
Genome browser
AA seq
338 aa
AA seq
DB search
MIEKNWLDLKKPDELEIKVSEYNPSQAVVAVGPFERGFGVTIGNALRRVLLSSLQGSAIT
AVQIQGVVHEFSSIPGVREDVTDLVLNLKGVAVRKDEEGSKRLRLSAEGPLAVTAGMISE
SAGVEIMNPDHVLCHLDKGASLAMELTVASGKGYVPAVANRSEDSPIGLIPIDAIFSPVL
QVAYKVENARVGQITDYDKLLLTLETDGSVTPEDAVAYAARILQEQLQTFINFEEPKSNT
QDEDPDPLPFSRNLLRKVDELELSVRSANCLKNDNIVYIGDLVLKTEHEMLRTPNFGRKS
LNEIKEVLKGMELELGMDIANWPPENVEELARRLDEPF
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaaagaattggcttgatctgaaaaagccggatgagcttgaaatcaaagtatct
gaatataacccaagtcaggcggttgtcgctgttgggccttttgaacgtggttttggtgta
actatcggtaatgcgttgcgtcgtgttttgctgtcatccttgcaaggttcggcaatcacc
gccgtccagattcagggtgttgtacatgaattttcgtcaattccgggcgtccgtgaagac
gttaccgatcttgttctgaatctaaagggcgtcgctgtccgcaaagacgaagaaggctca
aagcgtctgcgtcttagcgccgaaggtccgttggctgttacagctggcatgatttcggaa
agcgctggtgttgagatcatgaacccagatcatgttctgtgtcatcttgataagggtgcc
agccttgctatggagctcacagtggcttcgggtaaaggctatgttccggctgttgctaac
cgcagtgaagattcaccaatcggccttattccgatcgatgctatcttcagcccggttctg
caagtggcatataaagttgaaaatgcccgtgttggccagatcaccgactatgacaaattg
cttttgacacttgaaactgatgggtctgttacccccgaagatgcagttgcctatgcagcg
cgtatcttgcaggaacagctacagacattcatcaactttgaagagccaaagtcgaacaca
caggatgaagaccctgatccattgccatttagccgtaacttacttcgtaaggttgacgag
cttgagctgtcagtccgttcggctaactgtctgaaaaatgacaatatcgtctatattggc
gatcttgttcttaaaaccgagcatgaaatgcttcggacacctaattttggtcgcaagtcg
ttgaacgagatcaaggaagtgctgaaaggcatggagcttgagcttggtatggatattgcc
aactggccaccagagaatgttgaagaattagcccgacgcctcgacgagccgttttag
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