Alpha proteobacterium HIMB59: HIMB59_00003760
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Entry
HIMB59_00003760 CDS
T02249
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
apc
Alpha proteobacterium HIMB59
Pathway
apc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HIMB59_00003760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apc03021
]
HIMB59_00003760
03019 Messenger RNA biogenesis [BR:
apc03019
]
HIMB59_00003760
Transcription machinery [BR:
apc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HIMB59_00003760
Messenger RNA biogenesis [BR:
apc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HIMB59_00003760
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
Spore_III_AA
AAA
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFS48576
LinkDB
All DBs
Position
complement(342968..344224)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLNELKDKKPQELLDYAESLGIENASGLKKQEIYFSVLKKFAEKNEEIIGEGVLETMQD
GFGFLRSADSNYLPGPDDIYVSPNQIKKYGLRKGDTLEGPIRPPKDGERYFALVEINKVN
FIDIAKNNKFKTNFDNLTPLYPEKKFNLETDKPDTDLSSRIIDIIAPVGAGQRSLIVAPP
RSGKTVILQKIAKSIAENFPNVYLMVLLIDERPEEVTDMQRSVKGEVISSTFDEPAARHV
QVAEMVIEKAKRLAENKYDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLDRKLSDKRTYPAIDV
QKSGTRKEDLLLDAGDLQKVFILRKILSSMGTVDAMEFLLDKMKDCKTNEEFFSSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaaacgaattaaaagacaaaaaacctcaagaattattagattatgctgaatct
ttaggaattgaaaatgcctctggcttaaaaaaacaagaaatttatttttctgttcttaag
aagtttgctgaaaaaaatgaagaaattattggcgagggtgttttagaaactatgcaagat
ggttttggtttccttcgatctgcagactctaattatttaccaggaccagatgatatttat
gttagtccaaatcaaataaagaaatatggtcttcgaaaaggagacacactagaaggccca
attagacctccgaaggatggggaaagatattttgctcttgttgaaattaataaagtaaac
ttcattgatattgctaaaaataataaatttaaaactaattttgataacttaactcctctt
tatcctgaaaagaaatttaatttagagacagataagccagatacagatttatcatcaaga
ataattgacattattgctccagttggtgctggacaaagatctttaattgttgcacctcca
agatcaggtaaaacagtaatcttacaaaagattgcaaaatctattgcagaaaattttcct
aatgtttacttaatggttcttttaattgatgaaagaccagaagaagttactgacatgcaa
cgttctgttaaaggtgaagtaattagttccacatttgatgaaccagcagcaagacacgtt
caagtagcagaaatggttattgaaaaagcaaaacgcttagctgaaaataaatatgatgta
gttattcttttagactctattacaaggttaggtagagcatataatactgttgtaccatca
agtggtaaggtactaacaggtggtgttgatgctaatgcactacaaagaccaaaaagattt
tttggtgctgctagaaatattgaagaaggtggctcactcactattatcgccactgctctg
attgaaaccggtagtagaatggatgaagttatttttgaagaattcaaaggtacaggaaat
tccgaaattgtccttgatagaaaattatcagataaaagaacttaccctgctattgatgtt
caaaaatcaggtactagaaaagaagaccttcttttagatgctggagatcttcaaaaagta
tttattctaaggaaaattctatcttctatgggcactgtcgatgctatggaattcttactt
gataagatgaaagactgtaaaactaacgaagagtttttcagtagtatgaatcaataa
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