Alpha proteobacterium HIMB59: HIMB59_00004810
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Entry
HIMB59_00004810 CDS
T02249
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
apc
Alpha proteobacterium HIMB59
Pathway
apc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HIMB59_00004810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apc03019
]
HIMB59_00004810
03016 Transfer RNA biogenesis [BR:
apc03016
]
HIMB59_00004810
Enzymes [BR:
apc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HIMB59_00004810
Messenger RNA biogenesis [BR:
apc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HIMB59_00004810
Transfer RNA biogenesis [BR:
apc03016
]
Prokaryotic type
tRNA degradation factors
HIMB59_00004810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
DUF3016
KH-I_KHDC4-BBP
KH_2
S1_2
Motif
Other DBs
NCBI-ProteinID:
AFS48681
UniProt:
J9Z0X9
LinkDB
All DBs
Position
433673..435736
Genome browser
AA seq
687 aa
AA seq
DB search
MKIEHTFTLGNQQITLETNRIAKQADASVVVYCGETMVMANICAAKSQKPDIDFFPLTVN
YQEKYYASGKIPGGFFKREARPTERETLISRLIDRPIRPLFHKNFKNETQVTLTVLSYDG
TVDPDVIAMYATGAALAISGLPVAGTLGAARVGYIDGQLVANPTIQEMENSELDLVLAGT
EEGVLMVESEAQELPESTMLDAVNFGHEFYQNFIKEVHAFAEKTEIKTFEVPSLPDFYEG
LQKDIAGKITDPIREAYGLVDKQERSQKLNEIRSSIIDNVEADQVLAATTIIKDIEKDVV
RGDIIKNKSRIDGRKLDEVRQITCELDILPRAHGSSLFTRGETQALVVTTLGTGDDEQMI
DSLDPMHKQHFMLHYNFPPYSVGEVGRVGATGRREIGHGKLAWRAVHPMLPKKEDFPYTL
RLVSEITESNGSSSMATVCGSSLALMAAGVPIKKHIGGIAMGLIKEGDDFVVLSDILGDE
DHLGDMDFKVAGTMDGITSLQMDIKITSITKEIMEIALNQASGGRKHIIGIMSEALPEAR
TKFSKHAPQVISITIDKAKIKDVIGSGGKVIKNIVEVSGAKLEVNDDGIVKIASSNEESI
NKAKQMVEDIVAEPEVGKVYTGKVVKIVEFGAFVNFMGARDGLLHVSQISQKRVENVSDV
LSEGQEVQVKVLDVDRAGKVKLSMKEV
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatagaacatacgtttacgttgggaaaccaacaaattacccttgaaactaatcga
atagctaaacaagccgatgcgtcggtagtagtttactgtggtgagaccatggtgatggct
aatatttgtgctgcaaagtcacaaaaacctgatatcgatttttttccattaacagttaac
tatcaggaaaaatattatgcatctggaaaaattccaggtggattttttaaaagagaggct
cgaccaaccgaacgtgagacattaattagtcgtttaattgatcgacctattcgaccttta
tttcataaaaattttaaaaatgaaactcaagtaaccctgactgttctttcttatgatgga
actgttgatccggatgtcattgcaatgtatgccactggtgctgcattagcgatttcagga
ttaccggttgcaggaactctaggagctgcgcgtgttggatatattgatggccaactagtt
gctaacccaaccatacaagagatggaaaattctgaacttgatcttgttttagctggaacc
gaagaaggcgttttaatggtggagtcagaagcacaagagcttcctgaaagcaccatgttg
gatgccgttaactttggtcatgaattttaccaaaacttcatcaaagaagttcatgcattt
gctgaaaagacagagattaaaacgtttgaagtcccaagccttcctgacttttatgaaggt
cttcaaaaagatatcgctggtaaaattactgatcctattcgcgaagcttatggccttgtt
gataaacaggaaagaagccaaaagctaaatgaaattagatcttcaatcattgataatgta
gaagctgatcaagttttagccgcaacaaccatcattaaagacattgaaaaagatgttgtc
cgtggtgacatcattaagaacaaaagtcgtattgatggacgaaagctagatgaagtcaga
caaattacttgtgagttagacattctaccgcgagcacacggctctagtttatttactaga
ggtgagactcaggcattagtggtgaccactttaggtactggtgatgatgagcagatgatt
gactcactagatccaatgcacaaacaacattttatgttgcactataacttccctccttat
tctgttggagaagttggtagagtgggtgctactggaagaagagaaattggtcacggtaag
cttgcatggcgtgctgttcacccaatgttaccgaagaaagaagacttcccttacacactg
cgtttagtatcagagattactgaatcaaatggttcaagttctatggctactgtgtgtggt
tcctctcttgcattaatggcagcgggcgttccaatcaaaaaacacattggtggtattgca
atgggtctgattaaagaaggagacgactttgttgtattaagtgacatcttaggagacgaa
gatcatctaggtgacatggactttaaagttgcaggtaccatggatggtattacttctctt
caaatggatattaaaattacaagtatcactaaagagattatggaaattgcacttaaccag
gcatctggtggaagaaagcacattattggtattatgtccgaagctcttccagaggcgaga
acgaaattctctaagcatgctcctcaagtcatctctatcacaatcgataaagcaaaaatt
aaagatgtgattggttctggtggtaaagtcattaagaatattgttgaagtgtctggtgca
aaactagaagttaacgacgatggaattgtgaaaattgcatcgagtaacgaagagtccatt
aacaaagctaaacaaatggtagaagatattgtagcagagccagaagtagggaaagtctac
actggtaaagttgtcaaaatcgttgagtttggtgcttttgttaactttatgggcgctcgt
gatggacttttacacgtctctcaaatctctcaaaaaagagtagagaatgtctctgatgta
ttatcagaaggtcaagaagttcaagtcaaagttcttgatgtcgatcgtgcgggcaaagta
aagctcagcatgaaagaagtctaa
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