Alpha proteobacterium HIMB59: HIMB59_00009520
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Entry
HIMB59_00009520 CDS
T02249
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
apc
Alpha proteobacterium HIMB59
Brite
KEGG Orthology (KO) [BR:
apc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HIMB59_00009520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apc03021
]
HIMB59_00009520
Transcription machinery [BR:
apc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HIMB59_00009520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_ner
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AFS49145
LinkDB
All DBs
Position
873528..875582
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AA seq
684 aa
AA seq
DB search
MPKKKSANTTKTATKKKATTKKVVEKKVKAKTTSKKKEEINPSDFLQKENENQLKSLITK
EFDKELTEKSAAYIKSFVKIEDSIISVNDFLNYVENLDEDLFKLFKAYTNSSDNDISSSP
DDSEEEEKSTGVKSDDPVRMYLKEMGNVELLSREGEIAIAKRIESGLDKMMNSILECPAS
IDILKKWIDQVKLQEINLREIVDFDEYFNEENDPYSNSSKRKEIQKIINDKKKALLKEKQ
QLMKEQGIEIDKEKLEETASEEDVENESFSISIIEEFYKPEILKKLDRVLVLSENITKIK
KNKNITKISDTKSLKDLKKFQDEILNYFNEIKIKPHKLEEIIAHLYSINKEIQSKEVSIL
SIATQSKIARDIFLKHHSLKDTYTLYQKHMCSSDESFKAMFQKNAEKLKTIYKEILSLSK
IANQNTIEFKEKVREIQSGQRTANQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRSSRQ
LILELGREPTPEELSARLKMPIEKVRKVLKIAKEPVSLETPIGDDDDSFLGDFIEDKNAV
IPEDAVMQLNLRETTTKILSTLTPREERVLRMRFGIGMSSDHTLEEVGQQFSVTRERIRQ
IEAKALRKLKHPIRSKKLKSFMDS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaaaaaaatcagctaatacaacgaaaacagctactaaaaaaaaagctactaca
aaaaaggtagttgaaaaaaaagtaaaagctaagactacatcaaaaaaaaaagaagaaatt
aatccttctgactttcttcaaaaagaaaatgaaaatcaattaaaatccctcatcacaaaa
gaatttgataaggaacttacagaaaaatctgcagcatatataaaatcatttgtaaagatc
gaagactctattatttctgttaacgattttctaaattatgttgaaaatttagatgaggat
ttatttaaattatttaaagcttataccaattcatccgataatgatattagttcctctcca
gatgactcggaggaggaagaaaaatctacaggtgttaaaagcgatgatcctgttcgtatg
tatcttaaggaaatgggaaatgttgagttgctttcccgcgaaggtgaaatcgcaattgca
aaaagaatagagtcaggactagataaaatgatgaattccatattagaatgtcctgcttca
atagacattcttaagaaatggattgatcaagtgaagttacaagaaattaatttacgtgag
atcgtcgattttgatgaatactttaatgaagaaaatgacccttactcaaattcatctaaa
agaaaagaaattcaaaaaatcattaatgataaaaagaaagcactgttaaaagaaaagcaa
cagttgatgaaggaacaaggaatagaaattgataaagaaaaactagaagaaacagcctca
gaagaagatgttgaaaatgaaagtttttcaatctctattattgaagaattctataagcca
gaaattctaaaaaagttggatcgagttttggttttgtcagaaaatattactaaaattaaa
aagaataaaaatattactaaaatttctgataccaaatcacttaaggatctaaaaaaattc
caagatgaaatattaaactatttcaatgaaattaagatcaaacctcataagttagaggaa
attatcgcccacctttattcaattaacaaagaaattcaatctaaagaagtgtctatttta
agcatcgcgactcaatcaaagatagcaagagatattttcttaaaacaccacagtttaaaa
gatacttatactttgtatcagaaacatatgtgttcgtctgatgagagctttaaagcaatg
ttccaaaaaaatgctgaaaaattaaaaaccatttataaggaaattctcagtttatctaaa
atagctaaccagaatactatcgagttcaaagaaaaagttcgtgaaatccaatctggccaa
agaacagctaatcaagcaaaaaaagaaatgattgaagctaatttgaggttagttatttct
attgccaagaaatatacaaacagaggccttcaattcttagaccttattcaagaaggaaat
atcggtttaatgaaggcagtagataagtttgaatacagacgtggttacaagttttctaca
tatgctacttggtggattagacaagctattactcgttctatcgctgatcaagctagaaca
attcgtattcctgtccatatgatagaaacaattaacaaaatagtgaggtcaagtaggcag
ttaattttagaattaggaagagaacccacaccagaagaactatctgcaagattaaaaatg
ccaatagaaaaagttcgcaaagttctaaagattgctaaggagccagtgagtctggaaaca
ccaatcggtgacgatgatgatagtttccttggtgattttattgaagacaaaaacgctgtg
ataccagaagatgcagttatgcagcttaatttaagagaaacaaccactaagattttatct
actcttaccccaagagaagagagagttttgagaatgagatttggtattggaatgtcctct
gatcataccctagaggaagttggccagcaatttagtgttactagagaaagaattcgtcaa
attgaagcaaaagcattaagaaaattaaagcaccctataaggtcaaaaaaattaaagtct
tttatggactcttaa
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