Alpha proteobacterium HIMB59: HIMB59_00009570
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Entry
HIMB59_00009570 CDS
T02249
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
apc
Alpha proteobacterium HIMB59
Pathway
apc03420
Nucleotide excision repair
apc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HIMB59_00009570
03430 Mismatch repair
HIMB59_00009570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apc03400
]
HIMB59_00009570
Enzymes [BR:
apc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HIMB59_00009570
DNA repair and recombination proteins [BR:
apc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HIMB59_00009570
MMR (mismatch excision repair)
Other MMR factors
HIMB59_00009570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
DUF2670
Motif
Other DBs
NCBI-ProteinID:
AFS49149
UniProt:
J9YZU9
LinkDB
All DBs
Position
877387..879405
Genome browser
AA seq
672 aa
AA seq
DB search
MDLHLLNKEQKIAVEHQKGPLLVLSGAGTGKTRVLTSRFVYIVKNLKFDFNRIIAVTFTN
KAANEIKERVKKALDQNIESPWIGTFHSIFAKFLRKHAHHVGLKSNFNILDSEDQKKLIK
QVLEYCKIDKEVSESIYLNEIQNLKDEKIFPQDKSKILKYSSLENIDEIYNIYQQRLIEI
NAVDFGDILLHSYFILTNHKDIQETHSNYIQHILIDEFQDTNLLQYDLIKLLLNNNQNLF
CVGDDDQSIYAWRGAKIENIINFPDEFNCEVVRLTKNYRSNNAILEAASSVISNNKNRLG
KNLESYNNEIPEQKINLKSFYSQEEESLWVADNISRKYNDQETFGILVRLTAQMRSIEDK
LIKYALPYEIIGGPRFFERKEIKDVLSYLKLANSQSDDLSFERIINLPRRGIGEQSIKII
IDHSRSNNLSFFESLKDLAQSNKLSPSLLSKTQPFIDLINKISDLINKTSLEDLGIFVIE
ESGYLKMLENEKNKLKQIENESRIDNLKELVNALSEFENLDEFLEHVGLVNENQKKTHQN
SIKLMTLHAAKGLEFDHVYLPGWEEGIFPSSRALEQNSSKSLEEERRLAYVGITRAKYDL
NLSYASSRYTYGINNYSLPSRFLSEIKNINLEETSYIDNQNDTNRPKLLSSDNIALSPGK
KRMMEFLNKHKK
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcatttattaaataaagaacaaaaaatagctgtagaacatcaaaaaggccca
cttttagtcttatcaggcgcaggcactgggaaaactagagttcttacttcaagatttgta
tacatcgtaaaaaacctaaaatttgattttaatagaataattgctgtaacttttactaac
aaagctgcaaatgaaattaaagaaagagtaaaaaaagctttagatcaaaatatagaatcc
ccttggatagggacttttcattcgatttttgcaaagtttttaagaaaacatgctcatcat
gttggtcttaagagtaactttaatattttagatagcgaagatcaaaaaaaacttatcaaa
caagttttagaatattgtaaaattgataaagaggtaagtgaaagcatttatctaaacgag
attcaaaatctaaaagatgaaaaaatcttccctcaagataagagtaaaattttaaagtat
tcctctttagaaaatattgatgaaatttacaatatataccaacaaagattaattgaaatt
aacgctgttgattttggcgatattcttcttcacagttattttattttaactaaccataaa
gatatccaagaaactcactctaattatattcaacatatcctcatagatgaatttcaagat
actaatttactgcaatatgatttaattaaacttcttctaaataataatcaaaatttattc
tgtgtaggagatgatgatcaatcaatttatgcttggcgcggagctaaaattgaaaatatt
attaattttccagatgaatttaattgtgaggttgtaaggcttactaaaaattatcgatca
aataatgctatattagaggcagcttcaagcgttatcagtaataataaaaatcgattagga
aaaaatttagaaagttacaataatgaaattccagaacaaaaaattaatttaaaatctttt
tactcacaagaggaagaatctctttgggtggccgataacatttcaagaaaatataacgat
caggaaacgtttggaattttagtaaggctgactgcacaaatgagaagcattgaggataaa
ttgataaaatatgctctaccgtatgaaattattggtggtccaagattttttgagagaaaa
gaaataaaagatgttctttcctatctaaaattagctaatagccaaagtgatgatttgtct
tttgagagaataataaacctgcctcgaaggggaataggtgaacagtccattaagatcata
attgatcattctagatcaaataacctttctttttttgaaagcctaaaagacttagctcag
tcaaataaattatcaccatcattattatctaaaacccaaccttttattgatttaataaat
aaaatttcagaccttataaataaaacgagtttagaggatttaggaatatttgtcatagaa
gagagcggatatttgaaaatgttagagaatgaaaaaaataaactcaaacaaattgaaaat
gagtcgagaattgacaatttaaaagaattggtaaatgccttatcagaatttgaaaacctt
gatgaatttttagaacatgtgggtttagtcaacgaaaatcaaaaaaagactcatcaaaac
tccattaagttaatgacactgcatgccgctaaaggtttagaatttgatcatgtctattta
ccaggttgggaggagggaatatttccaagttctcgcgccttagagcaaaattctagtaaa
tctttagaggaagagaggagattggcttatgttggtataacgagagcaaaatatgatctg
aatttaagttatgcctcctcaagatatacttatggaattaataattactctttgccatca
agatttttaagtgaaataaagaacataaatcttgaagaaactagttatatagataatcaa
aatgatactaatagaccaaaattattgtcttctgataatattgctttatctcctgggaaa
aaaaggatgatggaatttttgaataagcataaaaaatga
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