Aeropyrum pernix: APE_0322.1
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Entry
APE_0322.1 CDS
T00023
Name
(GenBank) putative DNA repair helicase Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ape
Aeropyrum pernix
Pathway
ape03022
Basal transcription factors
ape03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ape00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
APE_0322.1
09124 Replication and repair
03420 Nucleotide excision repair
APE_0322.1
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ape03021
]
APE_0322.1
03036 Chromosome and associated proteins [BR:
ape03036
]
APE_0322.1
03400 DNA repair and recombination proteins [BR:
ape03400
]
APE_0322.1
Enzymes [BR:
ape01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
APE_0322.1
Transcription machinery [BR:
ape03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
APE_0322.1
Chromosome and associated proteins [BR:
ape03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
APE_0322.1
DNA repair and recombination proteins [BR:
ape03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
APE_0322.1
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAA79277
UniProt:
Q9YFB9
LinkDB
All DBs
Position
complement(233796..235661)
Genome browser
AA seq
621 aa
AA seq
DB search
MSGGSIVFPYGSWRKGQRELAEEVRRSVSEGELLLASAPTGFGKTAAVIYGLLSAGAERV
LYLVRTVNEIDPVVRELKRFGARFTFLFSARRMCPLMTAEGSLPSVEDFWGNCRIARAKG
VCSYYEELSRLDEAEVAQYVRSRPVISAYRLAWDIAKFKGACPFFALKGLVEDSQFIVAT
YPYLFKEDIFRSFLEPYDYGDFVAVVDEAHSLLNIHSLHEYRVSQRDLDLALKEVREYAS
SARDFIAWLESVLKKASRLKVSRITLLDKQPFLEGLDDLSVVEDVVETIRARKAEEALSL
SGPSGIGRVKTMASRIYSWLSVLVRDDSYLFAEKDEGGVLWLIATPLDPSRVVKEPLEKV
KAAVLLSGTMPSTKLYMEVLGVSRSFKFVDVNLMYGARGFGRFFTIVAADVTTAYRSRGD
SMYRLIASRIAMADRLLPGLKLAVYPSYEVMYRVVERLPADVETIVETRGISLDEVEAKI
LARDPGEKIIINAVAGGKLVEGVEFVDYEGRNLLSTVIVVGVPFPQPDDYTRKHLEVMAS
RIGVSNARKLVYLVNPMIKVRQALGRGIRGPEDRALYILMDYRYLRRDLKEVLGMPYHRV
VKGAEDFEEAVKAARSRVFGG
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
ttgtccggcgggagcatcgtcttcccctatggcagttggaggaaggggcagagggagctg
gcggaggaggttaggaggtctgtatctgaaggtgagctacttctggcgagcgcccccacg
gggttcggcaagaccgctgcggtcatatacggcctcctgtcggcgggtgctgagagggtt
ctctatcttgtccggactgtcaacgagattgaccctgtggtgagggagctgaagaggttt
ggggctaggtttactttcttgtttagtgctaggcgtatgtgccctcttatgacggctgag
ggctcgctgccgtctgtcgaggatttttggggtaactgtaggatagccagggctaaaggc
gtgtgcagctattacgaggagctgtctaggctggacgaggctgaggttgcccagtatgtg
aggagccgtcctgtgataagcgcttacaggctggcatgggatattgcgaagttcaagggc
gcctgccccttcttcgcgttgaaggggctcgttgaggatagccagttcattgtggcgact
tacccctacctcttcaaggaagacatcttcagatctttcctcgagccctacgactatgga
gacttcgtggctgttgtggacgaggcccacagtctcctcaacatacacagcctccatgaa
tacagggtgtctcagagggacttggatcttgctctcaaagaggttagggagtatgcctcc
tcggcgagggatttcatcgcgtggctcgagagcgtcttgaaaaaggcctcacgcttgaaa
gtatcgaggataacccttctggataagcagcccttcctggaggggcttgacgatctctct
gtagtggaggatgtagtcgagactataagggccaggaaggctgaggaggcgttgtctctc
tcaggcccctcgggtattgggagggttaaaacgatggcctccaggatatactcctggctc
tctgtcctggtgagggacgactcgtacctcttcgccgagaaggacgagggcggggtgcta
tggcttatagctacgcctctcgacccctccagggttgtcaaggagccgctcgagaaggtg
aaggctgccgtcctcctgagtggaaccatgccgtctaccaaactgtacatggaggtcctg
ggggtctcaaggagcttcaagtttgtcgacgtcaatcttatgtacggcgcccggggcttc
ggaaggttcttcacgatagtcgcggctgacgttacgactgcatacaggtctcggggggat
tctatgtataggcttatcgcctcaaggatagcaatggctgataggctgctacccggcctc
aagcttgcagtgtacccgagctacgaggtcatgtacagggttgttgagaggctgccagcg
gatgtggagactatagttgagactaggggcatcagcctggacgaggtcgaggcgaaaatc
ctcgctagagatcctggggagaagattatcataaacgctgtggctggcggcaagcttgtg
gagggcgttgagttcgtggactatgaggggaggaacctgctctcgactgttatcgtggtg
ggcgtcccgttcccgcagcctgatgactacactaggaagcacttggaggttatggcgtcc
aggattggggtttccaacgctaggaagctggtgtaccttgttaatccgatgataaaggtt
agacaggctcttgggaggggtattagagggcccgaggacagggctctctacatactaatg
gactatagatacttgaggagagatctaaaggaggtcctgggaatgccctaccaccgtgtt
gtcaagggtgccgaggacttcgaggaggctgtaaaagctgccagatctagggttttcggc
ggctag
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