Aeropyrum pernix: APE_1447
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Entry
APE_1447 CDS
T00023
Name
(GenBank) exosome complex exonuclease Rrp41 homologue
KO
K11600
exosome complex component RRP41
Organism
ape
Aeropyrum pernix
Pathway
ape03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ape00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APE_1447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ape03019
]
APE_1447
Messenger RNA biogenesis [BR:
ape03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
APE_1447
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
APE_1447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
BAA80445
UniProt:
Q9YC03
LinkDB
All DBs
Position
complement(918313..919053)
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AA seq
246 aa
AA seq
DB search
MAGPAQAGVELIRDGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPR
EPHQRFYVLPDRAALRVRYHMAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPR
TVIDVFLEVLQADGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELED
MYGEADMPVAAAPDIGEITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAIRKSYLE
VGGGQE
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
gtggcgggacctgctcaagccggcgtagagctaatacgagacgggaggaggcatgatgga
aggctgcccgaggatctgaggcctgttagaatgcaggtaggcatcctacacaacgccgac
ggcagcgccttagtggagttcggtaggacgagggtcctagcagctgtgtacggccccaga
gagccgcatcagaggttctacgttctccccgatagggccgcgctcagagtcagataccat
atggccccattctcgacagacgagaggaaaagccctgcccccagcaggagggagatagag
ctttccaaggttgtcagagaagccctcgaacctgttgtcctggcggaggagttcccgagg
actgttatagacgtgtttctcgaggtccttcaagccgacggaggcactaggacggctgcc
gttacagccgccagtctagccttggccgacgctggcatacctatgagggctctagtgggc
ggtgtggctgtaggcaagatacagggtgtcctcgtggttgatgttgacgagcttgaggat
atgtatggtgaggctgacatgccggttgcggctgctcccgatataggtgagataacgctt
ttacagctcaatggggtcctcacgggagaggagttccggacggccctggccatggcgctt
cgggcgatagacagggttgttgagatggagaaggaggctattaggaagagttatctcgag
gtggggggtggacaggagtga
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