Aeropyrum pernix: APE_1448
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Entry
APE_1448 CDS
T00023
Name
(GenBank) exosome complex RNA-binding protein Rrp4 homologue
KO
K03679
exosome complex component RRP4
Organism
ape
Aeropyrum pernix
Pathway
ape03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ape00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APE_1448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ape03019
]
APE_1448
Messenger RNA biogenesis [BR:
ape03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
APE_1448
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
APE_1448
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH_6
S1_RRP4
RRP40_S1
KH_1
S1
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
BAA80446
UniProt:
Q9YC02
Structure
PDB
PDBj
LinkDB
All DBs
Position
complement(919058..919765)
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AA seq
235 aa
AA seq
DB search
MSSERQLAGRIVVPGEPLPEEVEASPPYVIDYKGVKRATVVGLLREKGDGGGRAFVKLKE
IYVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDY
IKAKVVAFDKTRSPLLTVQGEGLGRIVRGKIVEISPAKVPRVIGRKMSMLKTLEEKTECK
IFVARNGRIHLECPNEDLEAIAVMAIKIIDEEAYTSGLTKRIIKFIEEERRIREV
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcgagagacagctggcagggcggatagttgttcccggagagccgttgcctgag
gaggtcgaggcttctcccccctacgttatagactataaaggggttaagagggctactgtt
gtcggcctgctgagggaaaagggtgatggaggcggtagagctttcgtcaagctcaaggag
atatacgtaccccaggctggagacgttgtcatagggcttatacagagtgtcggcattatg
aactggttcgtggatattaacagcccctatgttgccgttctttcggtccaagacttcctg
ggcaggccgtttaaccctgcggtggatgacatgcagtctcttctcaaggtaggagactat
attaaggcgaaggttgtcgcctttgacaagactaggagccctctgctgactgtccaggga
gaaggtctagggaggattgtcagaggaaagatcgtggagatatcacccgcgaaggtaccc
cgtgttattgggaggaaaatgagtatgttaaagacgctcgaggagaagactgagtgcaag
atattcgtggcgaggaacgggaggatacacttggagtgtcctaacgaagacctggaggcg
attgcggtgatggctattaagatcatagatgaagaagcctatacctcaggtctaacgaag
agaattatcaagttcatagaggaggagaggaggattagggaggtgtag
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