Aeropyrum pernix: APE_1646.1
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Entry
APE_1646.1 CDS
T00023
Symbol
endA
Name
(GenBank) tRNA-splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
ape
Aeropyrum pernix
Brite
KEGG Orthology (KO) [BR:
ape00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ape03016
]
APE_1646.1 (endA)
Enzymes [BR:
ape01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
APE_1646.1 (endA)
Transfer RNA biogenesis [BR:
ape03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
APE_1646.1 (endA)
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Paralog
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GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Rrp40_N
Motif
Other DBs
NCBI-ProteinID:
BAA80647
UniProt:
Q9YBF1
Structure
PDB
PDBj
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All DBs
Position
1043365..1043925
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AA seq
186 aa
AA seq
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MGDRCAPIKASGVLIGDSVLVTDVEQARSLYSCGYYGQPLDVEKPRGADFEGPLRLSLIE
SLYLAEKGVLEVAKPDGSSVGVEDLRTAVRGNPRFSMLYNIYRDLRERGFVVRSGLKFGS
DFAVYRLGPGIDHAPFIVHAYSPEDNIDPVEIVRAGRLSHSVRKKFVFAVTRGGDVSYLM
IDWFRP
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
ttgggtgacagatgcgccccgattaaagcctcaggagttctaataggggactccgtcctc
gtcaccgacgtggagcaggcgagatccctctacagctgcgggtactatgggcagcctctt
gacgtggagaagccgcggggcgccgacttcgaaggccccctcaggctaagccttatagag
tccctgtatctcgcggagaagggcgtcctggaagtggcgaaacccgatggctcctccgtg
ggagttgaggacctcaggacggcggtacgcggcaacccgaggttctcaatgctctacaac
atctacagggacctgcgggagaggggttttgtggtgaggagcgggctcaagttcggcagc
gacttcgcggtctacaggcttggccccggcatagaccacgcccccttcatagtacacgct
tacagccccgaggataacatagatcctgttgagattgtgagggctggcaggcttagccat
agtgtcaggaagaagttcgtcttcgccgtgaccagagggggcgacgtcagctatctcatg
atagactggttcagaccctaa
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