Aeropyrum pernix: APE_1758.1
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Entry
APE_1758.1 CDS
T00023
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ape
Aeropyrum pernix
Brite
KEGG Orthology (KO) [BR:
ape00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ape03016
]
APE_1758.1
Enzymes [BR:
ape01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
APE_1758.1
Transfer RNA biogenesis [BR:
ape03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
APE_1758.1
Prokaryotic type
tRNA splicing ligases
APE_1758.1
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF2120
Glyco_hydro_45
DUF7966
Motif
Other DBs
NCBI-ProteinID:
BAA80761
UniProt:
Q9YB37
LinkDB
All DBs
Position
1108968..1110413
Genome browser
AA seq
481 aa
AA seq
DB search
MLPTRRIDKYVWMIPQDAKPCMRVPAIVYADDFLIEKMKQDKTLLQAANVACLQGIQKYS
IVMPDGHQGYGFPIGGVAAMDIEEENGVISPGGVGYDINCGVRVLRTNLTEEEVRPKLKD
LVDTLYHNVPSGLGSTGKVKLSVQELDKVLDTGVEWAISRGYGWPEDKEHIEERGSWSLA
DSSKVSQTAKRRGAEQLGTLGSGNHFLEVQVVERVFDERIAKAYGLFEGQVVVMIHTGSR
GLGHQVASDYLMIMERAMRKYGTIPPDRELASIPYNSPEAQNYVRAMAAAANFAWTNRQM
ITHWTRESFKKVFHQDPDKLGLEIVYDVAHNIAKIEEYEVDGKRKKLVIHRKGATRAFPP
GHPEIPKDYMDVGQPVLIPGSMGTGSYILAGVPEGVKSWYTAPHGAGRWMSRSRAKRTKT
FNQVLEELAAKGIYIRASNRATVVEEMPEAYKDVDRVAQVAHAVGIGRLVARMRPIGVTK
G
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgctacccactagaaggatagacaagtatgtctggatgataccccaggatgctaagcca
tgcatgagggttcccgcgatagtgtatgcagacgactttctaatagagaagatgaagcag
gataagacgcttctccaggccgccaacgtagcatgcctccagggcatacagaagtattct
atagttatgcccgacgggcaccagggctatggcttcccgataggcggcgtcgcggccatg
gatatcgaggaggagaacggcgtgataagccccggaggcgtggggtacgatataaactgt
ggcgtgagagtcctaaggaccaacctgactgaggaggaagtcaggcctaagctgaaggat
cttgtggacacgctctaccacaacgtccccagcggcctggggagcactggcaaggtgaag
ctgagcgtccaggagctcgacaaggtactcgacacgggcgtagagtgggctatatcccgg
ggctacggctggccggaggataaggagcatatcgaggagaggggtagctggagcctcgcc
gactccagcaaggtgagccagacagccaagaggaggggggctgagcagctgggcactctc
ggcagcggcaaccacttcctcgaggtccaggttgttgagagggttttcgacgagaggata
gccaaggcgtatggcctgttcgagggccaggtcgtggtcatgatacatacgggcagcagg
ggcctgggccaccaggtggcaagcgactatctaatgataatggagagggctatgaggaag
tacggcaccataccgcccgacagggagctagccagcataccctacaactcgcccgaggcc
cagaactatgtcagggccatggcggcggcggccaacttcgcatggactaataggcagatg
ataacccactggactagggagagcttcaagaaggtgttccaccaggatcctgacaagctt
gggctcgagattgtgtatgacgtggcccacaacatagccaagatcgaggagtatgaggtt
gacgggaagaggaagaagctggtcatccacaggaagggagccaccagggcgttcccgccg
ggccatccagagatacctaaggactacatggacgtggggcagccagtcctcataccaggc
agcatgggtactggcagctacatactggcaggcgtgccggagggtgttaagagctggtac
accgccccccacggggccggcaggtggatgagcaggtctagggctaagaggactaagacg
ttcaaccaggtccttgaagagctggccgccaagggcatctacataagggctagcaacagg
gcgactgttgtcgaggagatgcctgaggcttacaaggacgtcgatagggtagcgcaggtg
gcgcacgccgtcggaataggtaggctcgtagcgcgaatgaggcctataggcgtgacaaaa
ggctag
DBGET
integrated database retrieval system
