Aeropyrum pernix: APE_1856
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Entry
APE_1856 CDS
T00023
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
ape
Aeropyrum pernix
Pathway
ape03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ape00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APE_1856 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ape03021
]
APE_1856 (rpoB)
Enzymes [BR:
ape01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APE_1856 (rpoB)
Transcription machinery [BR:
ape03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
APE_1856 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-ProteinID:
BAA80860
UniProt:
Q9YAT8
LinkDB
All DBs
Position
complement(1172360..1175869)
Genome browser
AA seq
1169 aa
AA seq
DB search
MSNKGGGQRSGEIGVDELWTVYKSFIRETGLARQHLDSFNRLVTQEIQKIIDSIREVRPQ
WRIYAGRRRYRRGRFEEHEIHLPDVKIVFGKARFKEPMAREVIESFDRRVTPFECRVRGI
TYSAPLMVEMTIVQDNMIEKTREVKIADFPVMVKSVLDPLSKYDEETVIEMGEDPGDPGG
YFIINGSEKVIVAQEDLAVNRIIVNKSTAATARITHTAKAVSTVLGLRRQAIVDRMSDGT
LEASLSRLRYRIPLVVLLRALGLEKDMEIMLAVSADPDVQREMLPSLEKGRALAPTKEDA
LKYLGNRIAPGQPLDVRIRRAEEFLDTQLLPHLGNRPEDRIKKAYFLAEMANRVLQLYLG
KRGEDDKDFLGNKRLRLAGDLIAELFRESLEALANTMAQKLEEQLAERRQIRLDFLVRPT
IISDRLKGAIATGNWGQDRTGISQQLDRTNWISLLSHLRRVISPLSRGQAHFEARDLHGS
HWGRYCPFETPEGINCGLVKNLALSAYISVGVDESVVEEILVKDLGVAPLERILEEAKQA
GEPPEIMLKGTKVFINGRPLGYHPNGAELARKIRELRRSDKLEVERPWEVSVYHLREGEI
DELYVNTDSGRLMRPVVVVENGEPKLTREHVEKLSRGEITFWDLVKQGVVEMLDPEEEQN
ALIAELPWEVTKEHTHMELWVPAIVGVAAATIGYLEHNQSPRNTYQAAMAKQALGVYALN
YRIRLDSHSYLLQYPQVPIVQTRMLDIMGYNERPAGQNMVVAIMSYTGYNIEDALIFNKG
SIDMGLARAYFFRVYTGIENEYPGGERDRITLPKPDEVYDYRGAAAYAKLEADGIVAPET
EVEGGEILIGRVSPPRFLGEGRVISMATVRRRDTSIPMRLGEKGVVDMVVISTTVERNKL
VKVRVRNLRIPEIGDKFASRHGQKGVIGMIFPRYDMPYTEEGIEPDVILNPHAIPSRMTV
GQLLEEIAGKLGAIKGRFVDATPFFKEDIDGLRIELLKEGYDPNAREVMYDGRTGQIIEA
PITIGVAYYQRLYHMVADKIHARATGRVHLLTRQPTEGKARQGGLRFGEMERDCLVGHGA
SMLLRDRMLDNSDAYVMYVCNTCGNIAWFNRRKKVLECPIHGEEGDIRPVKVPYAFKLLL
QEITSMMIKPELKVADKISVIRKVVGDYT
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
gtgtctaacaaggggggaggtcagcgtagcggagaaataggtgtggacgagctttggacg
gtgtataagtcgtttatcagggaaaccggccttgctaggcagcatctagactctttcaac
aggcttgttacgcaggagatacagaagataatcgacagtattagggaggtcaggccgcag
tggaggatctatgcgggtagaaggaggtataggcgtggaaggtttgaggagcacgagatt
catcttcccgacgtgaagattgtatttgggaaggctaggtttaaggagcctatggcaagg
gaggtcatagagagtttcgacaggcgtgtcacacccttcgagtgccgtgtgagggggata
acctactctgcacctctgatggtggagatgactatagtgcaggataacatgatagagaag
acacgtgaggttaagatagccgacttcccggttatggtgaagagcgttctagaccctcta
tccaagtacgatgaggaaactgttatagagatgggtgaggaccccggagatcccggcggc
tacttcataataaacgggagcgaaaaagtcatagttgcccaggaggatctagcggtaaac
aggattatagttaacaagagcacagcagctaccgccagaattacgcataccgctaaggca
gtctcaacagttctaggacttaggaggcaagccatagtggataggatgagcgacggcaca
ctcgaggccagtctaagcaggctgaggtataggataccccttgtggttctcctaagggcc
ctagggttggaaaaggatatggagataatgcttgctgtcagcgctgatccggatgtgcag
agggagatgttacccagccttgagaagggtagggctctcgcacccactaaagaggacgcc
ctcaaatacctgggcaataggatagccccgggacagccgctggatgttaggataagaagg
gcagaggagttcctggacacgcagctgctgccccaccttggcaacaggcctgaggacagg
ataaagaaggcgtacttcctggctgagatggctaacagggttctacaactgtatctaggt
aagaggggcgaggatgataaagacttcctcggcaataagaggctgaggctggcaggcgat
cttatagcagagctattcagagaatccctagaggctctggcgaatactatggcccagaag
ctcgaggagcagctggccgagaggaggcaaataaggctggacttcctcgtcagaccaacc
ataataagtgacaggctcaagggcgccatagccactggcaactggggtcaggaccgtact
ggtataagccagcagttggataggacaaactggataagcctgctcagccatcttaggagg
gttatatcgcctctaagcagaggtcaggcccacttcgaggcgagagacctccacggctcc
cactgggggcgctactgccccttcgagactcctgagggcataaactgtggtcttgtgaag
aaccttgcactttcagcctacatatctgtcggtgtggatgagtctgttgttgaggagatc
ctcgttaaggacctgggagtggcgcctctagagagaatcctggaagaggcgaaacaggcg
ggcgagccgccggagataatgttgaagggtaccaaggttttcataaatgggaggcctctc
ggctatcaccctaacggtgctgagcttgcgaggaagattagggagcttaggaggagtgac
aagctcgaggttgagaggccttgggaggttagcgtatatcacctgagagagggcgagata
gacgagctttacgtaaacaccgactccggcaggctcatgaggcctgttgtagtggttgag
aacggggagcctaagcttaccagggaacatgtggagaagctgtcgagaggcgaaataacg
ttctgggatctcgttaaacagggagtagtggagatgctggaccccgaggaggagcagaac
gcgttaatagctgagctgccctgggaggtcactaaggagcatacccacatggagctatgg
gtgccagcgatagttggtgtcgctgcagccaccattgggtacctggagcacaaccagagc
ccgaggaacacctaccaggctgctatggctaagcaggccctcggtgtctacgctctaaac
tataggataaggcttgacagccactcatacctgcttcagtacccgcaggtacctatagtc
cagactaggatgctggacataatgggctataacgagaggccggccgggcagaatatggta
gtcgctataatgtcatacacgggatacaacattgaggacgcgctgatattcaacaaggga
tcgatagacatgggactggcgagggcctacttcttccgtgtatacactggaatagagaat
gagtatcccggcggcgagagagacaggataaccctgccgaagcctgacgaggtttacgac
tataggggtgcagcggcatacgcgaagctagaggccgatggaatagtagcccccgaaacc
gaggttgagggcggcgagatcctgataggcagggtaagcccgcccaggttcctcggcgaa
ggcagggttatatcgatggctaccgttaggaggcgtgacacaagcataccgatgaggctg
ggtgagaagggggttgttgatatggttgtcatatccacaacagtcgagaggaataagcta
gtgaaggtcagggttagaaacctgaggataccagagataggggacaagttcgccagcagg
cacgggcagaagggggttataggcatgatattcccgaggtatgacatgccatacacggag
gagggtatagagcccgacgttatacttaacccgcacgccataccctctaggatgactgtc
ggccagcttctagaggagatcgctggaaagctcggagctattaagggcagattcgtggat
gccacccccttctttaaggaggatatagatggactgaggatagagctgttgaaggagggc
tacgatccgaacgcgagggaggttatgtacgacggtaggacagggcagattatagaggca
ccgataacaatcggtgtcgcatactatcagagactttatcacatggttgcagacaagatc
cacgcaagggctactggaagggtgcatctattgactaggcagcctaccgagggtaaggcc
cgtcagggaggcctcaggttcggagagatggagagggactgtttggtgggccatggagcc
tccatgctgcttagggacaggatgctggacaacagcgacgcgtacgtgatgtacgtgtgt
aacacttgtgggaatatagcgtggtttaacaggaggaagaaagtgctcgaatgccccata
catggagaggagggtgacatcaggcctgtcaaagtaccctacgcgttcaaactgctgctg
caggagataaccagtatgatgataaagccggaactcaaggtagccgacaagatatccgtc
atcagaaaagtcgtcggcgactatacatga
DBGET
integrated database retrieval system
