Alteromonas pelagimontana: CA267_005735
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Entry
CA267_005735 CDS
T06582
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
apel
Alteromonas pelagimontana
Pathway
apel02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
apel00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CA267_005735 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apel03021
]
CA267_005735 (rpoD)
Transcription machinery [BR:
apel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CA267_005735 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QJR82753
UniProt:
A0A6M4MI32
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All DBs
Position
1248670..1250505
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AA seq
611 aa
AA seq
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MAQSKQSQIKLLIAKGKEQGYLTFAEVNDHLPQDIVDSDQIEDIIRMINDMGIQVSESAP
DSDELLMQETTADEDAAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTREGEIEIA
KRIEDGINQVQCSVAEYPEAITYLLEQWDLYEAEEIRLGDIISGFVDPNEEQDLAPTATH
IGSELSQKELDDEDDDDDDDDEEEEEDTGVDPELAREKFAQLREQYVKARGVIEKKGRSH
KDSRIEIEALSEVFKEFRLVPKQFDRMVKNMRDMMDKVRIQERLVMKFCVMNAKMPKKDF
IKSFAGNETSTKWLHEALASKADYAEKLGEYKEDIERCISKMNQVEQETGLVIIDIKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEE
LSERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIIQPLDSATGGSLKD
ATQEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEQLRSFLDE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaagcaagcagtctcagattaaactcctgattgcaaaaggtaaagagcaaggt
tacttaacctttgcagaagtaaatgaccacctgccgcaagacatagtcgattctgatcaa
atcgaagacatcatccgcatgattaatgatatgggtattcaagtttcagaatcagcacct
gattctgacgaactactcatgcaggaaactacggctgatgaagatgctgcagaagcagcc
gctcaagcactggctactgtcgaaagtgaaataggccgcaccacagacccggtacgtatg
tacatgcgtgaaatgggtacggtcgaactgcttacccgcgaaggcgaaattgaaattgcc
aagcgcattgaagatggtatcaatcaggttcaatgttctgttgcagaatatccggaagct
atcacgtatttgctggaacagtgggatttatatgaagcggaagagattcgtttaggcgat
attatctccggctttgttgatcctaatgaagaacaggatttagcacctacggctactcac
attgggtcagaattgtctcagaaagaactggacgatgaagatgatgacgacgacgatgat
gacgaggaagaagaggaagataccggcgtagatccagaactggcgcgggaaaaatttgcc
cagttacgcgagcagtatgtaaaagctcgtggcgttatcgaaaagaaaggccgttcacat
aaagattcccgaatagaaattgaagcgttaagcgaagtttttaaagaattccgtttggtg
ccgaagcagtttgatcgcatggtaaaaaacatgcgcgatatgatggacaaggtgcgcatt
caagaacgcctggtcatgaagttctgtgtaatgaacgccaagatgccgaaaaaggatttt
attaaatcgtttgccggcaatgaaacatcgactaaatggcttcatgaagctctggcttct
aaggccgattacgccgaaaaacttggcgaatataaagaagacattgagcgctgcatttct
aaaatgaaccaggttgaacaggaaactggtctggtcattattgatatcaaagatattaac
cgtcgcatgtcaatcggtgaagcaaaagcgcgccgggcgaaaaaagaaatggtggaagcc
aacttacgactggttatttctattgctaagaagtataccaatcgcggtttacagttcctg
gatctaattcaggaaggcaatattggtttgatgaaggcggtcgataagttcgaatatcgt
cgaggctataagttttcaacctatgcaacgtggtggatacgccaggcgattacccgctct
attgcagatcaggcgcggactattcgtattccggtgcatatgattgagaccatcaacaaa
ctcaatcgtatttctcgtcagatgcttcaggaaatgggtcgtgaaccgtctcctgaagaa
ttgtcagaacgtatgctgatgccagaagacaagattcgcaaggtgttaaaaattgctaaa
gagccaatctcgatggaaacccctatcggtgatgatgaagattcgcatcttggtgacttt
atcgaggacagcactattatccagcctctcgattcggctacgggtggaagtttgaaagac
gccacacaggaagtcttggctggactgacggctcgtgaagcgaaagtactgcgtatgcgt
tttggtattgatatgaacactgaccacaccttagaagaagtgggcaagcagttcgatgtt
acccgtgagcgtattcgtcagattgaagcgaaagcattacgtaagcttcgtcaccctagc
cgctcagaacagctgcgcagcttcctggatgaataa
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