Alteromonas pelagimontana: CA267_006145
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Entry
CA267_006145 CDS
T06582
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
apel
Alteromonas pelagimontana
Pathway
apel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA267_006145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apel03019
]
CA267_006145
03009 Ribosome biogenesis [BR:
apel03009
]
CA267_006145
Enzymes [BR:
apel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CA267_006145
Messenger RNA biogenesis [BR:
apel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CA267_006145
Ribosome biogenesis [BR:
apel03009
]
Prokaryotic type
rRNA helicases
CA267_006145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QJR80384
UniProt:
A0A6M4MB08
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All DBs
Position
1355639..1357354
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AA seq
571 aa
AA seq
DB search
MTTTVELTFKDLGLPEPILQALEKVGYEKPSPIQAESIPLLLAGHDLLGQAQTGTGKTAA
FALPMLAKIDPEAKIPQLLVLAPTRELAIQVAEAFQVYASFSQKVKVLPIYGGQSYDNQI
RQLKRGVQVVVGTPGRVIDHIKRGTLKLNELKFLVLDEADEMLRMGFIDDVELILSHAPE
TRQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTANLIRQRYCQVAGHHKLEALTRI
MEVEPFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVEKLKQGAIDIL
VATDVVARGLDVERVSHVINFDIPYDSESYVHRIGRTGRAGRTGDAILFISHREKRLLFA
IEKTTRQPIEAMPIPSISQLNETRLSRFKTAVLEATKDDTVDSLIPLVETLREETEASPE
RLMAALIKLAQGDEPLLLKESDRPDLNSKPPRSDRPERERGPRPERGGREQRKPKGKSKP
EAGMQRFRIEVGHSHGAKPGNIVGAIANEANISSKNIGAIEIYDTFSTVDLPQGMPKETK
DLLQGTRVAGQRLGLREWSDTPPKKRKDKNA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaccactactgtcgaactgacatttaaagacctcggattaccagaacctatcttacaa
gcacttgaaaaagttggctatgagaaaccttcccctattcaagcagaaagtatcccgctt
ttacttgcgggccatgacctgttaggacaagcccagaccggcaccggaaaaaccgcggca
ttcgcgttaccgatgctggcaaaaattgacccagaagccaaaattccacaacttttagtt
ttggctcccacccgcgagcttgcaattcaggtagctgaagcttttcaggtttatgccagt
ttttcacagaaagtgaaagtcctgccaatttacggcgggcaatcctatgacaaccagata
cgccagcttaagcgcggtgtacaggttgtagtgggcacgccaggacgggttatcgaccat
attaaacgcggtacattaaaattaaacgaattaaagtttcttgttctcgatgaagccgac
gaaatgttacgtatgggttttattgatgatgtggaactgatcttaagccatgcacctgag
acacgtcagacggcattgttctctgccaccatgccagggccgattaagaagattacccag
cggtatctaaaagatcccaagcacgtaaaaattgcgtcaaaagtcagtacagccaactta
attcgccagcgttactgccaagtcgctgggcaccataaattggaagccctgacgcggatt
atggaagttgaaccttttgacggcatgatcattttcgtgcgcaccaagaccgccaccgtc
gaacttgctgataaattgtcagcaagaggttatgacgttgaaccacttaatggtgacatt
ccgcagaatgcgcgtgaaaggaccgttgaaaagcttaaacaaggcgctattgatatctta
gtggctactgatgtcgtcgcacgcgggctggatgttgaacgtgtgagtcatgttattaac
tttgatattccttatgactctgaatcctatgtacaccgaattggtcgtacaggtcgtgca
ggtcgtaccggcgacgccatcttgtttatctcgcacagagaaaagcgtctgttgttcgct
attgagaagaccactcgccaacctattgaagcaatgcccattccttcaattagtcagttg
aatgaaactcgcctgtctcggtttaaaactgcagtgctggaagccactaaagatgatacg
gtagattcgttgatcccactggtggaaacgctacgtgaagaaaccgaagcatcaccagaa
cgattaatggcagcgcttatcaaattagcacaaggtgatgaaccgctactgttaaaagaa
agcgaccggccggatcttaacagcaagccacccagaagcgatcgcccagagcgcgagcgc
ggccctcgtccagaacgtggtggtcgtgagcaacgcaaacctaaaggtaaatcgaaaccc
gaagcaggcatgcaacgttttcgtattgaagtaggccacagtcatggcgctaaaccaggc
aatattgttggcgcgatagcaaacgaagctaatatcagcagtaagaatattggtgccatc
gaaatctatgacacctttagtaccgttgatttacctcaaggcatgcccaaagaaaccaag
gacttgctgcaaggtactcgcgttgccggacaacgtttaggtttacgcgaatggtctgat
acgccgccgaaaaaacgtaaagacaaaaatgcttaa
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