Alteromonas pelagimontana: CA267_012305
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Entry
CA267_012305 CDS
T06582
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
apel
Alteromonas pelagimontana
Pathway
apel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA267_012305 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apel03019
]
CA267_012305 (rnr)
03016 Transfer RNA biogenesis [BR:
apel03016
]
CA267_012305 (rnr)
Enzymes [BR:
apel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CA267_012305 (rnr)
Messenger RNA biogenesis [BR:
apel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CA267_012305 (rnr)
Transfer RNA biogenesis [BR:
apel03016
]
Prokaryotic type
tRNA degradation factors
CA267_012305 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
WHD_RNase_R
NRho
UPF0158
Motif
Other DBs
NCBI-ProteinID:
QJR81506
UniProt:
A0A6M4MH50
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All DBs
Position
2801860..2804217
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AA seq
785 aa
AA seq
DB search
MSDDPHFQREKAKYENPVASREHLMALMKEEDKPLSFLDICAAVNASSEESRIGIQRRLR
AMEREGQVQFTKQKKYVLQKQEELIQGRVIGHRDGFGFLRPTDKSGDLFISPGQMQLFMH
DDIVEARENGTDRRGRKEAFITQVITPRAEPIVGRFFTEHGMAVVIPDDSRLNYEILIPQ
EHVNGARMGQVVVVEITQRPRRRVSPVGKIIEVLGEHMAPGMEIEMALRTFDIPHVWPNG
VTKQTENLGTEVPEDAKAGRIDLRQLPLVTIDGEDARDFDDAVFCEPLDDGGWQLWVAIA
DVSYYVRTGTALDDEAQNRGNSVYFPEQVIPMLPEVLSNGLCSLNPEVDRLCMVCEMTIS
DQGKLEGYQFYEAVMNSHARLTYSKVWQILQGDKDLHQRYEAHVPHLKNLYALYRALKKS
RLQRGAIEFETQEVKFVFNAQRKIENIVPLIRNDAHKLIEECMIMANVSAAKWLEKHKAP
ALYRVHDKPDADRLTAFTAYLSEIGVSHRINEDATPADFTDVVDKTKHRPDQELIQTMLL
RSMKQAVYDGENIGHFGLALDAYAHFTSPIRRYPDLVVHRALKSIIAKQKGKQAVSGAKA
YTHEEIEQLGEQCSTTERRADDATRDVADWLKCEFMLDHVGESFEGVVASVTNFGLFVRL
TEYHIDGLVHITSLDNDYYRYDDVKQTLVGDSGANQFRLGDALVVKVAAVNLDERKIDLT
LDQAMLRTPSGKKVSVRSASKKSGSGKGRAKKERDGRSDKGSAKGKSTSTARKTSKNKTV
KGRKD
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgatccccatttccagcgcgaaaaagcaaaatacgaaaatccagtagccagc
agagaacacctcatggcgctaatgaaggaagaggacaagcctctgtctttcctggatatc
tgtgcagcagtcaacgcgtcgagtgaggaaagtcgaattggcattcagcgccggttgaga
gccatggagcgtgaagggcaggttcagttcaccaagcaaaaaaaatacgttctgcaaaag
caggaagagctgattcagggccgggttattggccaccgcgacggttttggctttttacgg
ccgacagataaaagcggcgacttatttatcagccccgggcaaatgcagttgtttatgcac
gatgacatcgtcgaggccagagaaaacggcaccgatcgacgtggccgcaaagaagccttt
atcacgcaagtcatcactcctcgtgctgaacctatcgtcggccgtttttttaccgagcat
ggaatggctgtagtgatcccggatgacagccgtcttaactacgaaattctgattcctcag
gagcatgtaaacggcgctcgaatggggcaggtcgtcgtggtagaaatcacccagcggccc
cgtcgtcgggttagtccggtgggaaaaataattgaagtgttgggtgagcatatggcaccg
ggcatggaaatcgaaatggcgctgcgcacgtttgatattccccacgtatggccaaatggc
gtaacaaagcaaacagagaatctaggcaccgaagtgccggaagacgccaaagcagggcga
atcgatttacgccagttacccttggttactattgatggtgaagacgcccgggatttcgac
gatgcggtattctgcgaaccattggacgatggtggctggcagctttgggtggcaattgcc
gatgtgagctattacgtacgcactggaacggctcttgatgatgaagcgcagaatcgcgga
aattcagtgtattttcctgagcaggtaatcccgatgttacctgaagtgctgtcaaacgga
ctctgttcgttaaacccggaagtggatcggttgtgtatggtgtgcgagatgacaatctcc
gatcaaggtaagcttgaaggataccagttttacgaagccgtaatgaattctcacgctcgc
ctcacatactccaaagtatggcagattttgcaaggcgataaggatcttcaccagcgttac
gaagcgcatgtgccgcatctaaagaacctttacgcgttataccgcgcgttgaaaaaatcg
cgtctgcagcggggtgccatcgaatttgaaacccaggaggttaaattcgttttcaacgct
cagcgcaaaatcgaaaatatcgtgcctttaatcagaaatgacgcgcacaagctaattgaa
gaatgcatgattatggcgaacgtcagcgcagccaaatggcttgaaaagcataaagcgcct
gcgttgtaccgcgtccacgataaacctgatgccgatcgcttaacggcttttactgcttat
ttaagcgaaattggcgtgtctcaccgaatcaacgaagatgcgactccagctgattttact
gatgtggtagataaaaccaagcaccgaccggatcaggaactcatccagacaatgctgctg
cggtcaatgaagcaggcagtatatgacggcgagaacattggccactttggtctggccctg
gatgcctacgcgcattttacttcccccattcgtcggtatcccgatcttgtggtgcatcgt
gcattgaaaagcattattgccaaacaaaagggcaaacaggcggtcagtggcgcgaaagcc
tatacccatgaagaaattgaacagttgggagaacaatgttccaccactgagcgcagggca
gacgacgccacgcgcgatgtagcagactggctcaagtgtgagttcatgctggatcatgtc
ggcgaaagtttcgaaggcgtggtggcctcggtaaccaattttggcttatttgtgcgttta
actgagtaccatatcgacggtttggtacatatcacctctctggataatgattactatcgt
tacgacgatgtgaagcaaaccttggttggagacagcggtgctaaccaatttcgccttggc
gatgcgttagtcgtgaaggttgctgcggtaaatctggatgagagaaagatagatcttacc
cttgatcaggcaatgttgcgtacgcccagcggcaaaaaagtgtcggttcgcagtgcgagt
aaaaaaagcggaagtggaaaaggcagggcgaagaaagagcgcgacggccgctcggacaaa
ggcagcgcaaaaggaaagtctacgtcgactgcgcgaaaaacatcaaaaaataaaacagta
aaaggcagaaaggattaa
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