Alteromonas pelagimontana: CA267_013585
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Entry
CA267_013585 CDS
T06582
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
apel
Alteromonas pelagimontana
Brite
KEGG Orthology (KO) [BR:
apel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
apel03009
]
CA267_013585 (srmB)
Enzymes [BR:
apel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CA267_013585 (srmB)
Ribosome biogenesis [BR:
apel03009
]
Prokaryotic type
rRNA helicases
CA267_013585 (srmB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QJR81719
UniProt:
A0A6M4MF44
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All DBs
Position
complement(3099445..3100665)
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AA seq
406 aa
AA seq
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MTFEELELDDSLCQAVAEMGYATPTAIQSLVIPVAMEGKDILASAPTGTGKTAAFLLPVC
QFLLDYPRQQPGATRILILTPTRELALQVYEQAKALTVHTDIICGVITGGINYGTDRDTL
EQNLDILVATPGRLFEHINTESADCRDIECLILDEADRMLDMGFGSIVNQIAAEARWRKQ
NMLFSATLEGGGVQQFARELLDTPAILEAHPSRKEKAKIHQWYHLADDINHKRALLVHIL
KEHVTTAIVFVKTRDRLQEVKDYLTSQGISVCWLQGEMPQDKRNAALARFKAGEVPVLVA
TDVAARGIDVPNVTHVINFDMPRKADIYVHRIGRTGRAGAKGTAISLVEAHDFEVIGKIS
RYTEEPLKARYIEGLRPKHKAPKITSKKKKVKKSGATAKKKSAKKK
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgacgttcgaagaattagaactggatgattccctttgccaggcagtcgccgaaatgggt
tacgccacgccaactgctatccagagtctggtgatccccgttgccatggaaggcaaggac
atacttgcctcagcaccaacgggaaccggcaaaactgccgccttcctgctgcctgtctgc
cagtttttattggattaccccagacaacaacctggcgctacccgcatccttattctcacg
cctacccgcgaactggcgttgcaggtttacgaacaggcgaaagcccttactgtccacacc
gatataatttgcggcgtaatcaccggcggcattaactacggcactgaccgggatacgctt
gagcagaatctggatattcttgtggcaacaccgggccgtctgtttgagcatatcaatact
gaaagcgccgattgccgtgacattgaatgccttattcttgatgaagccgaccgtatgctc
gacatgggctttggcagtatcgttaaccagatagcagcagaagctcgctggcgtaaacag
aatatgctgttttctgccacactggaaggcggcggcgttcagcagtttgccagagaattg
ctggatacaccggccattcttgaagctcatccttcgcgcaaggaaaaagcaaaaattcat
cagtggtatcatttggctgatgacatcaatcataaacgcgcgctgctggtgcacatttta
aaagaacacgtcaccaccgccatcgtgtttgtgaaaacccgggatcggctgcaggaagtc
aaagattatttaaccagccagggaatttctgtttgctggctgcagggagaaatgccgcaa
gataagcgtaatgctgctctggcgcgctttaaggctggtgaggtaccggtacttgttgcc
acagatgtcgcggcccgcggaatcgatgtccccaatgtcacccatgttattaatttcgat
atgccgcgcaaggcagacatctacgtgcaccgcattggccgcacaggacgcgctggcgct
aaaggtaccgcgatatccctggtagaagcccacgattttgaagttattggtaaaatcagc
cgctataccgaagagcctttaaaagcccgctacattgaaggcttacgccccaaacataaa
gcgcctaaaattacctcaaaaaagaaaaaagtaaagaagtctggcgctacggcaaagaaa
aaatccgcgaaaaagaaataa
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