Alteromonas pelagimontana: CA267_014805
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Entry
CA267_014805 CDS
T06582
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
apel
Alteromonas pelagimontana
Pathway
apel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA267_014805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apel03019
]
CA267_014805
Enzymes [BR:
apel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CA267_014805
Messenger RNA biogenesis [BR:
apel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CA267_014805
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
ERCC3_RAD25_C
CMS1
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QJR81933
UniProt:
A0A6M4MFT0
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All DBs
Position
3364133..3365500
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AA seq
455 aa
AA seq
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MAFANLGLSAPLLQAISDKGYETPSPIQQQAIPAILSGSDVMAAAQTGTGKTAGFTLPLL
ELLQKGERPKHNHIRALILTPTRELAAQVEESVKDYSKHLSLSHAVVFGGVGINPQMQRL
RKGIDILVATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRIIKMLPTRRQ
NLLFSATFSDPIRELANTLVNNPQEISVSPANSTVEKVEQWLVPVDKSRKTAALIKLIKR
QKWQQILVFSRTKHGANRIAKKLESAGIAAAAIHGDKSQGARTRALADFKNGKVSALVAT
DIAARGIDIDQLPFVVNLDLPNVPADYVHRIGRTGRAGASGQAVSFVSEDELDQLKDIER
LIKTVIRRETLPGFEPELPLTETVLDTRPVKANRPKKAKAHSTDGAGAKPRNPRQGKPGG
NRSQGQGSGKPGEAEKKRRFRSNGANGKPSSNHSS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgccaatttggggttatctgcccctttgctccaagcaatttctgataaaggc
tacgaaacgccttcgcccattcaacaacaagccattcctgccattttaagcggcagtgac
gttatggctgcggcgcaaacgggtaccggcaaaacagcaggctttacgctgccgctgctg
gagttgctgcaaaaaggcgaacgtcccaagcataatcatattagagcgcttattttaaca
cctacccgcgagcttgccgcacaggtagaagaaagcgtcaaagattatagcaagcatttg
tcgcttagccatgctgttgtttttggcggtgtaggtatcaatccgcaaatgcaacgcctg
cgtaaaggtatcgatattttagtggcaacgcctgggcggctgctggatttatatcagcaa
aatgcggtgaaattttcacagcttgaagtgctggtgttggatgaagcggatcgtatgctc
gatatgggctttatccatgacatcaagcgaatcatcaagatgttacccacgcgccgtcag
aatttgttgttttccgccacattttcagatcctatccgcgaattagcaaatacgctggta
aataatccgcaagaaatttcggtgtcaccggctaattccacagtcgaaaaagtggagcag
tggctggttcctgtggacaaatcacgcaaaaccgccgccttaattaaactgattaaacgt
cagaaatggcagcaaattctggtgtttagtcgcactaaacatggagccaatcggattgct
aaaaagctggaatcagcgggtattgctgccgctgctattcatggcgataaaagccagggc
gccagaacccgtgcattagctgattttaaaaatggtaaagtcagtgcgttggtggccaca
gatattgctgccagaggtattgatattgatcagcttccgttcgtggtgaatctggatttg
ccgaacgtgcctgcagattacgttcaccggattggccgtactggccgcgcgggtgcaagt
ggtcaggcagtatcttttgtcagtgaagacgaactggatcaattaaaagatattgaaaga
ctgataaaaaccgttattcgtcgggaaacgctcccaggcttcgaacctgaactaccgctt
actgaaacggtgttagatactcgtccggtgaaagcaaacagaccgaaaaaagcgaaagcc
cattccactgatggagcaggcgctaagccaagaaaccctcgtcagggaaaacccggcggc
aaccgttcgcaggggcagggtagcggaaaacccggtgaagcagagaaaaagcgtcgattt
cgctccaacggtgccaacggtaaaccttcttcaaaccattcgagttaa
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