Achromobacter pestifer: FOC84_04915
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Entry
FOC84_04915 CDS
T09260
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
apes
Achromobacter pestifer
Pathway
apes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOC84_04915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apes03019
]
FOC84_04915
03009 Ribosome biogenesis [BR:
apes03009
]
FOC84_04915
Enzymes [BR:
apes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FOC84_04915
Messenger RNA biogenesis [BR:
apes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FOC84_04915
Ribosome biogenesis [BR:
apes03009
]
Prokaryotic type
rRNA processing factors
FOC84_04915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QKH34321
UniProt:
A0A7D4I5S6
LinkDB
All DBs
Position
974317..977373
Genome browser
AA seq
1018 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSFFKEGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDLPQGMSIIARTAGIGRNVEELQ
WDLSYLLQLWTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVTLPSGGAIVIDHTEALVSV
DVNSARSTRGADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLMLIPNKHLETPH
HHIERLRHDDPRLEELKTSFELVEAPATDAPWQPREHEIKSRPEALVKGITPSQPAPVST
PAPAAPAPAPAAAGGLGGLFKRLVGWLTGGGSEAAKPAAAQEDSAKRASSGRGKGRSGHD
GQERRGERHGSDRNRNRRGEGAEASEGGRHHVRGNRRPEGERQERGERHNRSDARGERDT
QATQAALASNRPEQAVEAGGEDTGAGRNRRRGRGRNRREEGQSDAPMSEQESMVAALAQT
VATALPETKSAPEAVLEVAETAEAVEQTADGVPAMEGAEGAADPERKRRRRRSRRGRRSP
DEAGLAGSDEQLDDGADDDGVEQPEETAVQPAVTAAQAVEPVAQAQQVEAAADAAPAQGQ
QAEAAPVEPAKVAAAPVEAQQAEPVQAEAPQAVEPVAQSVQTAAAEVTQPVSVQAASEVS
APAASEPAPVEAAAVEPVVAPAPAPVAPVAPAAQVAAAPAPAASQPIVVPAAAPSAKAQA
LHDVVNAAGLQWVETDPDRHAQTQLRIAAAHTPVRLGRERKPVASVSNEPLVQVETRH
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgttcaatgcgacgcatcaggaagaattacgcgtcgctatcgtcgat
gggcaaaaactcatcgacctcgacatcgagactgccggccgcgaacaacgcaaaggcaac
atctacaaaggtgtcatcacccggatcgaacccggcctcgaagcctgcttcgtcaactac
ggcgaagaccgccacgggttcctgcccttcaaggaagttgcccgcagcttcttcaaggaa
ggcgtggacgtccgtagcgcccgcatccaggacgccctgcgcgaaggccaggaactgatc
gtccaggtcgaaaaggaagagcgcggcaacaagggcgcggccctgaccacgttcatctcg
ctggccggccgctacctggtcctgatgcccaacaacccccgcggcggcggcgtttcgcgc
cgtgtcgagggcgaggatcgccaggaactgcgcgacaccatggagcagctcgatctgccc
cagggcatgagcatcatcgcccgcaccgccggcatcggccgcaacgtcgaagaactccag
tgggacttgtcctacctgttgcagctctggacggccatcgacggcgccgcgcgcgacaac
tccgcgcccatcctgatctacctggaatccagcctggtcatccgggccatccgcgattac
ttctccccggaaatcggtgagatcctcatcgataccgacgagatcgccgaccaggccacg
gccttcatgagcgtggtgatgccggacaacgtccagcgcgtcaaacgctaccgcgacgat
atccccctcttctcccgtttccagatcgaacaccagatcgaaacggcgtactcgcgcacg
gtcacgctgccctcgggcggcgccatcgtcatcgaccacaccgaagccctggtttccgtg
gacgtcaactcggcccgctccacgcgcggcgccgacatcgaggaaaccgcgctgcgcacc
aactcggaagcggccgacgaagtggcccgccagttgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaggacagcaagaaccagcgcgccgttgaacagcgc
ctgcgtgacgccctccatttcgaccgcgcccgcgtccagatgggcaagatttcgcgcttc
ggcctgatggaactgtcgcgccagcgcctgcgcccggccctgaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggtgtgatccgcgacgccgagtccagcgccctgcac
gtgctgcgcctgctgcaggaagaggccatgaaggaaaacaccgccgccgtgcacgcccaa
gtgcccgtcgacgttgccacctacctgctgaacgaaaagcgcgccgacatcaccaagatg
gaagcccgcctcaaggtcaacctgatgctgatccccaacaagcatctggaaacgccgcac
caccacatcgagcgcctgcgccacgacgatccgcgcctggaagagctgaagaccagtttc
gaactggtcgaagccccggccacggacgccccttggcagccgcgcgagcacgagatcaag
tcgcgtccggaagccctggtcaagggcatcacgccgtcgcagcccgctccggtgtccacg
ccggcgcccgccgcgccggctcccgccccggcagccgccggcggcctgggtggcctgttc
aagcgcctggtcggctggctgaccggcggtggttctgaagcggccaagcccgccgccgcc
caggaagacagcgccaagcgcgccagctccggccgcggcaagggccgcagcggccatgac
ggccaggaacgccgtggcgaacgccatggttcggaccgcaaccgcaaccgccgcggcgaa
ggcgccgaggccagcgaaggcggccgccaccacgtgcgcggcaatcgccgccccgagggc
gagcgccaggaacgcggcgaacgccacaatcgcagcgacgcccgcggcgaacgcgacacc
caggccacgcaagcggccttggcgtccaaccgccccgagcaagccgtggaagccggcggc
gaggacaccggcgccggccgcaaccgccgccgcggccgtggccgcaatcgtcgcgaggaa
ggccagtccgacgctccgatgagcgaacaggaaagcatggtcgccgcgctggctcagact
gtcgccaccgccctgcccgagaccaaatccgcccctgaggccgttctggaagtggccgag
accgccgaggctgtcgaacagaccgccgatggcgtgcctgccatggaaggcgccgaaggc
gcggccgacccggaacgcaagcgtcgccgccgccgcagccgccgtggccgccgcagcccg
gacgaagccggtctggctggtagcgacgagcaactggacgatggcgccgacgatgacggc
gtcgagcaaccggaagaaaccgctgtccagcccgccgtgaccgccgcacaagccgtggaa
cccgtggcccaggcccagcaggtcgaagccgctgccgacgccgcaccggcgcaaggccag
caggccgaagccgcgccggttgaacccgccaaggtcgccgccgccccggtcgaggcccag
caggctgaacccgtccaagccgaagccccgcaagccgtcgaacccgtggcccagtccgtg
caaacggctgccgcggaagtgacccagccggtctccgtgcaggccgcgagcgaggtttcc
gcccccgctgcgtccgagccggcgccggtggaagccgccgccgtcgagcccgtggttgct
cccgctcccgcgcctgtcgccccggttgcgcccgccgcgcaggtggcggccgccccggcg
cccgcagccagccaacccatcgtggtgccggctgccgccccgtcggccaaggcccaggcc
ctgcacgatgtggtgaatgccgctggcctgcagtgggtggaaaccgatccggaccgccac
gcccagacccagctgcgcatcgccgcggcgcacacgccggtccgcctgggccgcgagcgc
aagccggtcgcgtcggtgtccaacgaaccgctggttcaggtcgaaacgcgccactaa
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