Achromobacter pestifer: FOC84_28385
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Entry
FOC84_28385 CDS
T09260
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
apes
Achromobacter pestifer
Brite
KEGG Orthology (KO) [BR:
apes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
apes03009
]
FOC84_28385 (rlmD)
Enzymes [BR:
apes01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FOC84_28385 (rlmD)
Ribosome biogenesis [BR:
apes03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FOC84_28385 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_23
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_31
Usp
Motif
Other DBs
NCBI-ProteinID:
QKH38640
UniProt:
A0A7D4I2Y7
LinkDB
All DBs
Position
6003053..6004540
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AA seq
495 aa
AA seq
DB search
MSDVLSIESLDLEARGIARRDGKVVFVEGALPGERVTTVTLRRKPSYEIARVDEVLRPSS
QRVVPRCPHFGVCGGCAMQHLEPSTQVAIKQRSLEDTFWHVGKLRPARILAPLQGPTWGY
RYRARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPRHVSDLLIPLREMIGSMSAPD
RMPQIEVSLGEGVTALVLRHLLPLTDDDVAILRAFAAKHNVQWWLQSKGPETVHPLEREH
GDALAYTMPEFGLRMPYRPTDFTQVNHAINRAMVSRALKLLEVQTTDRVADLFCGLGNFT
LPLATQGKEAVGVEGSKALTDRAFDAASRHGLGDRTSFATLNLFEVDVDWLRGLGYFDRM
LIDPPREGAHAVAQALSLLEAHERPVRIVYVSCNPATLARDAAIMVHEGGYVLKSAGVIN
MFPHTGHVESIAVFESLDAEGIQIVRERARQRAIQAAAEAAAAEEAKAAAAAEKAAAKQA
ATDAYHAKVAAEAQD
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgttttgagtattgaatccctggacctggaagccaggggtatcgcccgccgc
gacgggaaagtcgttttcgtggaaggcgccttgccgggcgaacgggtcaccacggttacg
ctgcgccgcaagccgtcctacgagatcgcgcgcgtggacgaggtgctgcggccgtcgtcg
cagcgggtggtgccgcgctgcccgcatttcggcgtctgtggcggctgtgccatgcagcac
ctggagcccagcacgcaggtggccatcaagcagcggtcgctggaagacaccttctggcat
gtcggcaaactgcgcccggcgcgcatcctggcgccgctgcaaggtccgacctggggctac
cgctaccgcgcccgcctgtcggtgcgcgtggtgcccaaaaagggcggcgtgctggtcggt
ttccacgagcgcaagagcagctatgtggccgatatgcgcgaatgccatgtgctgccgcgc
cacgtcagcgacctgctgattcccttgcgcgaaatgatcggctccatgtccgcgccggac
cgcatgccgcagatcgaggtgtcgctgggcgagggcgtgaccgcgctggtcctgcgccac
ctgctgccgctgaccgatgacgacgtcgccatcctgcgcgccttcgccgccaagcacaat
gtgcagtggtggctgcagtccaagggcccggaaaccgtgcatccgctggaacgcgagcac
ggcgacgcgctggcctacaccatgccggagttcggcctgcgcatgccgtaccggcccacc
gatttcacgcaggtcaaccatgccatcaaccgcgccatggtgtcgcgcgcgctgaaactg
ctggaagtgcagactaccgaccgcgtggccgacctgttctgcggcctgggcaacttcacg
ttgccgctggcgacgcagggcaaggaggcggtcggcgtggaaggcagcaaggcgctgacc
gaccgcgctttcgacgcggcatcccgccacggcctgggcgatcgcaccagcttcgccacc
ctgaacctgttcgaggtggacgtggactggttgcgcggcctgggctatttcgaccgcatg
ctgatcgatccgccgcgcgaaggcgcgcatgcggtggcgcaggccctgtcgctattggag
gcgcacgagcgtcccgtgcggatcgtctacgtgtcctgtaatccggccacgctggcgcgc
gatgcggccatcatggtgcatgaaggcggttatgtgctcaagagcgcgggcgtgatcaac
atgttcccgcacacgggccatgtggaatccatcgcggtgttcgaatcgctggacgccgaa
ggcatccagatcgtgcgtgaacgcgcccgccagcgcgccatccaggccgcggcggaagcg
gcagccgcggaagaggccaaggccgcggccgccgccgagaaggcggccgccaagcaggcc
gccaccgacgcctatcacgccaaggttgcggccgaagcgcaggactga
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