Acetobacter pasteurianus IFO 3283-03: APA03_03080
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Entry
APA03_03080 CDS
T01812
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
apf
Acetobacter pasteurianus IFO 3283-03
Pathway
apf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APA03_03080 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apf03021
]
APA03_03080 (rho)
03019 Messenger RNA biogenesis [BR:
apf03019
]
APA03_03080 (rho)
Transcription machinery [BR:
apf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
APA03_03080 (rho)
Messenger RNA biogenesis [BR:
apf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
APA03_03080 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
AAA_22
ATPase_2
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
BAI01511
LinkDB
All DBs
Position
complement(320122..321420)
Genome browser
AA seq
432 aa
AA seq
DB search
MHLAELKAKSPADLLACAEDLNIENASSLRKQDMMFAILKALADNDQAIYGEGTLEIMHD
GFGYLRSPESNYLPGPDDIYISPTQVRRFGLRTGDTVEGQIRAPRDGERYFSMLKINTIN
FEPPDAVRHRINFDNLTPLYPERRLQMEVESQATAPEPKAEKGKKGAQKDFTPRVIDLVS
PIGMGQRALIVAPPRSGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARSVRGE
VIASTFDEPAHRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLT
GGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSELVLD
RKLADKRTFPAIDITKSGTRKEELLVDRATLSKMWVLRRILAPMGTMDAMDFLLDKLKYS
KTNNDFFEAMNN
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttgcggaactcaaggccaaatccccagcggatcttctggcctgcgctgaagac
ctgaatattgaaaacgcgtcatccctgcgtaagcaggacatgatgtttgccatcctgaag
gcactggccgacaacgaccaggcgatctacggcgaaggcacgcttgagatcatgcatgac
gggtttggttacctgcgttcccccgaatctaactatcttcccggcccggatgatatttat
atctcccccactcaggtgcgccgctttggcctgcgcacgggtgatacggtagaaggccag
attcgcgccccgcgtgacggtgaacgctacttctccatgctcaagatcaacacgatcaac
tttgagccaccggatgccgtacgccaccggatcaactttgataacctgaccccactttac
cctgaacgtcgccttcagatggaagtggaaagtcaggcaaccgcaccagaaccgaaggca
gaaaaaggcaagaaaggcgcgcagaaagactttacgccgcgcgttattgatcttgtctcc
cccatcggtatgggccagcgcgcccttatcgtggcgccgccccgttcgggtaaaacggtt
atgctgcaaagcattgcctcgtccatcagcgccaaccatccggaagttttcctgattgtt
ctgctgattgatgaacgccctgaagaagtgaccgacatggcgcgttctgtgcgcggtgag
gtgattgcttccacctttgatgaacccgcacaccgccacgtgcaggttacagaaatggtg
ctggaaaaagccaagcgccttgttgaacacaagcgcgatgtggtgatcctgctggattcc
atcacccgtctggcccgcgcctacaacaccgttgtgccctcatccggcaaggtgctgacc
ggtggtgtggatgccaacgccctacagcggcccaagcgcttctttggtgctgcccgtaat
attgaagaaggcggttccctcaccatcatcgccacggcgctgatcgataccggcagccgt
atggacgaagtgatctttgaagaattcaaaggcacgggtaactccgaactggtgctggat
cgcaagctggcagacaagcgcaccttcccggctatcgacatcaccaagagcggcacccgt
aaggaagaactgctggtggatcgggctacgctgtccaaaatgtgggttctgcgccgtatt
ctggcccctatgggcacgatggacgccatggacttcctgctggacaagctgaaatacagc
aaaaccaacaacgacttcttcgaagccatgaacaactga
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