Anaplasma phagocytophilum HZ: APH_0345
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Entry
APH_0345 CDS
T00327
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aph
Anaplasma phagocytophilum HZ
Pathway
aph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APH_0345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aph03019
]
APH_0345
03009 Ribosome biogenesis [BR:
aph03009
]
APH_0345
Enzymes [BR:
aph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
APH_0345
Messenger RNA biogenesis [BR:
aph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
APH_0345
Ribosome biogenesis [BR:
aph03009
]
Prokaryotic type
rRNA processing factors
APH_0345
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
MOEP19
HALZ
Motif
Other DBs
NCBI-ProteinID:
ABD43325
UniProt:
Q2GKZ9
LinkDB
All DBs
Position
328494..330404
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AA seq
636 aa
AA seq
DB search
MCFVSNSGSGKRILIDAVYLDEIRVAVLDEGKVVEFDQELKDRKQLRGGNIYFAVVRRIE
PSLQAVFIEYGVGKHGFLPFSEIAVEHYQIPQEEKDVLLKNLYGDNSEQDEHSEEEECTG
DAEPSEESSSEDADKVQSLAEEQRAGKRCSEGKNGKGKLVPHKMYKVQNVIKVDQKLMVQ
ITKEERGSKCATFSTYIVLAGRYCIFMPNSGNKNSGISRRIDDCVHRKNLKEFLDEMKLP
KEAGVIIRTAGSNRTHKELERDLSYLQSTWDEVKSSFESVTHPSLLYVEADVIKRTLRDF
CDENVHDVVVAGSKAFGLVKEYAKSMFGNRLRVRTYKGSIPIFTHYRVNAQILELYTDKI
YLPSGGYLVITPTEALVSIDVNSGRMTGEDSIEETAYRTNMEAVKEIARQVNLRGLSGLI
VIDFIDMVKYRYCRAVEAEVREAFKGDKAKIQFGYISAFGLMEISRQRVKQSILDSSTVQ
CHHCKGVGRTRSLESISASILRDVSYVANKNPEKILVVSVVSSVVSHLFNSKRRQIAEIE
SEFKVLIRLDVDDNLGISDYNIRAEKGYSSLLHEELSSAVVVTADSVKKKEEAAELPAEG
TDHQKSLAENVAEVGESVVAVTWVDKWLTRMLSKIS
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
ttgtgttttgtgtctaatagtggtagtggaaagagaatattaattgatgccgtataccta
gatgagataagagttgcggtgctcgacgagggaaaggttgttgagtttgatcaggaatta
aaggataggaagcagttacgtggggggaatatttatttcgctgttgttcggcgtattgag
ccttcattgcaggctgtttttatagagtatggtgtaggaaagcacgggtttttgccgttt
tcagaaatagcggttgagcattatcaaattcctcaggaagagaaagatgttctgttgaag
aatctgtatggtgataattcggagcaagatgagcactctgaagaggaagagtgtacggga
gatgcagagccttctgaagaaagtagttcagaagatgctgataaagtgcagtccttagct
gaggaacagcgagcaggcaagaggtgttctgaaggcaagaatggcaagggcaagttggtg
ccgcacaagatgtataaggtgcagaatgtcataaaggttgatcagaaactcatggttcag
atcacgaaggaggagaggggtagcaagtgcgctactttttcgacttatatagttcttgca
ggaaggtattgcatttttatgccaaattctggaaacaagaacagtggcatatcgcggcgt
atagatgattgtgtccacaggaaaaatttgaaagagtttctagatgagatgaagcttcca
aaagaggctggtgttattattaggactgctgggagcaatagaactcataaggaattggag
cgagatttatcgtacttacagtctacgtgggatgaggtaaaaagtagttttgagtctgtt
acgcatccttctctattgtacgtagaagctgatgtgataaagcgcactttgcgcgatttc
tgtgatgagaacgtccatgatgttgtggtagctggtagtaaggcatttggtcttgtgaag
gagtacgcaaagtctatgttcggcaataggctgcgtgtaaggacatataagggtagtatt
cccatatttacgcattatagggtcaatgctcagattttggaattgtatacagataagata
tatctgccttctggagggtatttggtaataacacctacggaggctttagtttccatagac
gtgaattctggaagaatgacaggagaagatagcatcgaagaaaccgcctataggacgaat
atggaggccgtaaaagagattgctaggcaggtgaatttacggggattatccgggctcatt
gtgatagatttcatagatatggtaaagtatcgctattgcagggctgttgaggctgaggtg
cgcgaagctttcaagggggataaagctaagattcagtttgggtacataagtgcatttggt
ttgatggaaatttccaggcagagggtgaagcagagtatcctggatagcagcacagtgcag
tgtcatcattgcaagggggttggtagaacgaggtcattagagtctatttctgctagtatt
ttgcgtgatgttagttacgtggctaacaagaatcctgaaaagatacttgtggtttctgtt
gtttcttcggttgtatcgcatctattcaatagcaagcgaaggcagattgctgagatagag
agtgaattcaaagttctcatcaggcttgatgtagatgataatctaggtatatctgattat
aatattcgtgctgagaagggctatagtagcttgcttcatgaggagttgtctagtgctgtg
gtcgtgacggcagattctgttaagaaaaaagaggaagcagcggaattgcctgctgagggt
actgatcatcagaagagtctggcagaaaatgttgcggaggttggagagagcgtggttgcg
gtgacttgggttgataagtggttaacgcggatgctctctaaaatatcgtaa
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