Anaplasma phagocytophilum HZ: APH_1023
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Entry
APH_1023 CDS
T00327
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aph
Anaplasma phagocytophilum HZ
Pathway
aph03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aph00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APH_1023 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aph03021
]
APH_1023 (rpoC)
03400 DNA repair and recombination proteins [BR:
aph03400
]
APH_1023 (rpoC)
Enzymes [BR:
aph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APH_1023 (rpoC)
Transcription machinery [BR:
aph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APH_1023 (rpoC)
DNA repair and recombination proteins [BR:
aph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APH_1023 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ABD43638
UniProt:
Q2GJ69
LinkDB
All DBs
Position
complement(1082696..1086925)
Genome browser
AA seq
1409 aa
AA seq
DB search
MKTLDLYGYTSIAQSFDKICISIASPESIRAMSYGEIKDISTTNYRTFKVEKGGLFCPKI
FGPVNDDECLCGKYRKKRYRGIVCEKCGVEVTSSKVRRERMGHIELVSPVAHIWFLKSLP
SRIGALLDMPLKAIENILYSGDFVVIDPVATPFAKGEVISEVVYNQARDAYGEDGFFALT
GVEAIKELLTRLDLEAIRATLRNELESTSSEMKRKKVVKRLRLVENFIKSGNRPEWMILT
VIPVLPPDLRPLVSLENGRPAVSDLNHHYRTIINRNNRLEKLLKLNPPAIMIRNEKRMLQ
EAVDALFDSSRRSYVSSRVGSMGYKKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
SLKLHQCGLPKKMALELFKPFICSKLKMYGIAPTVKLANKMIQSEKPDVWDVLDEVIKEH
PILLNRAPTLHRLGLQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAQLE
ARVLMMSTNNILSPSNGRPIIVPSKDIVLGIYYLTLLEEDPEVREVQTFAEFSHVEYALH
EGIVHTCSRIKYRMQKSAADGTVSSEIVETTPGRLILWQIFPQHKDLTFDLINQVLTVKE
ITSIVDLVYRSCGQRETVEFSDKLMYLGFKYASQSGISFGCKDMIIPDTKAAHVEDASEK
IREFSIQYQDGLITKSERYNKVVDEWSKCTDLIARDMMKAISLCDEKGKYNSIYMMANSG
ARGSASQMKQLAGMRGLMAKPSGEIIETPIISNFREGLSVFEYFNSTHGARKGLADTALK
TANSGYLTRRLVDVAQDCTVVEHDCGTSGGVVARAVIEGGVVVATLDSVVLGRVAAVDTY
NPVTGEKLFTSGELIDESKLDKIRVAGLDAVKVRSPLTCESKQGICALCYGRDLAIGDLV
SIGEAVGVIAAQSVGEPGTQLTMRTFHVGGTAMRGVEVSNLIALMDATVKLVNSNVVTDK
YGNQIVMSRSCEVVLLDAAGNEKMRHSVPYGAKLYATEGQSVSMMEKIAEWDPYTIPIIT
EKTGTIKYVDLIYGVSINEVLDESTGISNRVVVDWKMHLQGANLRPRLVLLDDNGAVVTL
SSDLEASYFVPIGAVLNVQDGQRVHAGDVITRIPRGSIKTRDITGGLPRVIELFEARKPK
EHAIVSDVDGYVEFGKDYYRSKRRIFIRPVDKSLPVVEYLVPKGKHTIVNEGDFVHKGDL
LMDGDPDQHDILRVLGTEALANYMISEIQQVYRLQGVKIDNKHIEVILRQMLQKVEITEP
GDTMYLIGEHVSREEVMKLNRKLAEAGKKEVSYVPILQGITKASLDTNSFISAASFQETT
KVLTEAAFAGKEDPLYGLKENVIVGRLIPAGTGFIMNKIKKLAMLDQSDYATYYNSELRG
IMGDLGSSIIEEFQTPAPDGSISGSVVDY
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgttggatttgtatggctataccagtatagcacagtcgttcgataagatttgc
atatccatagctagtccagaaagtataagggctatgtcctatggagaaatcaaggatatc
tctactactaactatcgtacctttaaggtggagaagggggggctattctgtcctaagatc
tttggtccggttaatgatgacgagtgtctttgtggtaagtataggaaaaagcgctacagg
ggcattgtctgtgagaaatgcggagtggaggtaacttcttctaaagttagaagagagaga
atggggcacatagagttggtctcacctgttgctcatatttggtttcttaaatccctgccg
tcacgtataggtgctctgctagacatgcctttaaaggctatagagaatatactatatagt
ggagattttgtagtaattgatccggtagctactccttttgctaagggggaagtaatcagt
gaggtagtttataatcaggcgcgggatgcctatggtgaggatggattttttgcgctcact
ggtgttgaagctataaaggagttgctaactcgccttgatttggaggctatcagggctact
ttgaggaatgagcttgagtcaacttcttcggaaatgaagcgtaagaaggttgttaagagg
ctcaggcttgttgagaattttattaagtctggtaataggccggagtggatgatcttgact
gtaattcctgttcttccaccggatttgaggccgttggtatcactggaaaatggtagacct
gcggtatcagatttaaatcaccattacaggactataataaaccgtaataacagattggaa
aagctactcaagctgaatcctcctgcgatcatgatacgcaatgaaaagaggatgttgcaa
gaagcggtagatgctctgtttgacagcagtcggcgtagttacgtttccagtagagttgga
agcatgggctataagaagtctcttagcgacatgctaaagggtaagcagggtaggtttagg
cagaacttgcttggtaaaagggttgactattctggtaggtcagtaatagttgtgggccct
agtttgaagctgcatcagtgtggtttgcccaagaagatggctcttgagctgttcaagccg
ttcatttgttctaagctgaagatgtacggtattgctccgactgtgaagttggctaacaag
atgattcagagtgagaagcctgatgtttgggatgttttggatgaagtgattaaagagcat
cctattctccttaatagggctcctacactgcatagattgggtcttcaggcgtttgatcct
gtattgatagaaggtaaggcaatacagttgcatccgttggtatgtagtgcgtttaatgcc
gatttcgatggtgatcagatggcggtacacgtgccattgtctcaagaggcgcagcttgag
gcgcgcgtgttgatgatgtctacaaataacatcttgagtccttctaacggtaggccaatt
atagttccgtctaaggatatcgttcttgggatatactatttaacgttgttggaagaagat
cctgaagtgcgtgaagtgcagacttttgcggagttcagccacgtggagtacgcattgcat
gaggggattgtgcatacgtgctcaaggataaagtacagaatgcagaagagtgcagctgat
ggtactgtatctagcgaaatagttgagactacgcctggtaggttgatattgtggcagata
ttcccgcagcataaggatttgacttttgacttgatcaaccaagtgcttacggttaaggaa
atcacctccattgtggatcttgtctatagaagttgtggtcagagggagacggtagagttc
tctgacaaactgatgtatttgggattcaagtatgcttcgcaatcaggtatttcttttggt
tgtaaggatatgattattcctgatactaaggctgcgcacgttgaagatgctagcgaaaag
atcagggaattctctatacagtatcaggatggtttgataaccaagagcgagcgctataac
aaagtggttgatgagtggtctaagtgtaccgatttgattgctagggatatgatgaaggct
atatctttatgtgatgagaaagggaaatataactcgatttacatgatggcgaattctggg
gctagaggttctgcgtctcagatgaagcagcttgctggtatgagaggtctgatggcgaaa
ccgtcaggtgagattattgagactccgattatttcgaattttagggaagggttgagtgta
tttgaatatttcaattctactcacggggctcgtaaaggtcttgctgatacagcattgaag
actgctaactccggatatctaactcgtaggcttgtagatgtagcgcaggattgtacagtt
gttgaacatgattgcggcactagcgggggcgttgttgcgagagcggtcatagagggtggt
gttgtagtagcaacgctggatagtgtggtattaggaagggttgctgctgtagatacctat
aatcctgttacaggagagaagttatttacttcaggtgagcttattgatgaaagcaagctt
gataagataagagttgcgggattagatgcggtgaaggtgcggtcaccgcttacttgtgag
tccaaacaaggtatttgtgctctatgttatggtagagatctagctattggggatttggtg
tccataggggaagctgtaggtgtgatcgctgctcagtctgttggggaaccgggtacacag
ctgacgatgagaacgttccacgttggtggtactgctatgcgtggtgttgaggtatctaat
ctgatagccttgatggatgcgactgttaagctggttaacagtaatgtggttactgacaag
tacggtaatcagatagttatgagtaggtcgtgtgaagttgtgctgctggatgctgcgggc
aatgagaagatgcggcatagtgtgccatatggcgctaagttgtatgctaccgaagggcaa
tcggtgagtatgatggagaagattgctgagtgggatccttatactatacctattatcact
gagaagacaggtactataaagtatgtggaccttatatatggggtctctatcaacgaggta
cttgatgagtcgactggtatttctaacagggtggttgtagattggaagatgcatttacaa
ggtgcaaatctgcggcctaggcttgtgttgctagacgataatggtgctgtggttacatta
tcgagtgacttggaagctagttattttgtcccgataggtgcggtattgaatgtacaggat
gggcaaagggtacatgctggtgatgttatcacgaggatacctaggggttctatcaagacg
cgtgatattacgggtggtctacctagggttatagagctgtttgaagctcgtaagccgaag
gagcatgctattgttagtgacgttgatggatacgttgagttcggtaaggattattaccgt
tcgaagaggcgtatatttatacgtcctgtagacaagagcttgcctgtagttgaatatcta
gttcctaagggtaagcacacaatagtcaatgagggtgattttgtgcataagggtgatctg
ttaatggacggtgatcctgatcagcacgatatccttagggtgttaggaactgaagcgctg
gcaaattacatgatatccgagatccagcaggtatataggttgcagggtgttaagatagac
aacaagcacatagaggtgatactcaggcagatgttgcagaaggtagagattactgagccg
ggtgatacaatgtacctgataggcgagcatgtgtctcgtgaagaggttatgaagctgaat
aggaagcttgctgaggctggaaagaaagaagtttcttatgtgccgatactgcaggggatc
actaaggctagtctggatactaactctttcatatctgctgcgtcattccaggagacaact
aaggtattgactgaggcggcttttgcaggaaaagaagatcctctatatgggttgaaggaa
aatgtgattgtcggtcgtctgataccagcaggtacagggttcataatgaacaagatcaag
aagcttgctatgcttgatcagagcgactatgcaacatattacaatagcgaattgcgagga
atcatgggtgatttgggaagctctataatcgaagagtttcaaactccagctcctgatggt
agcataagcggctccgttgtggattactag
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integrated database retrieval system
