Anaplasma phagocytophilum HZ: APH_1024
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Entry
APH_1024 CDS
T00327
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aph
Anaplasma phagocytophilum HZ
Pathway
aph03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aph00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APH_1024 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aph03021
]
APH_1024 (rpoB)
03400 DNA repair and recombination proteins [BR:
aph03400
]
APH_1024 (rpoB)
Enzymes [BR:
aph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APH_1024 (rpoB)
Transcription machinery [BR:
aph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APH_1024 (rpoB)
DNA repair and recombination proteins [BR:
aph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APH_1024 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ABD43405
UniProt:
Q2GJ68
LinkDB
All DBs
Position
complement(1086938..1091089)
Genome browser
AA seq
1383 aa
AA seq
DB search
MSSAGDSGPGYVLNDFDAVPRLSYARSIDIRDSLSDLIRIQRDSYDAFIGIDEGSSGGIQ
SIFQSMFPIRDPLGRAVLEFVSCNIGEPQYDEYECIKRGITFSVPMRITLRFVVWKVQEV
SFKEVKYVVDEGTLERSVKYMKEQEVSIGDLPMMTSYGTFIINGIERVIVSQMHRSPGVF
FDSDKGKTYSSGKLIYSARIIPYRGSWLDFEFDIKDIIYFRIDKKRKLPVTYLLKALGMS
NNDILDTFYDKVLYVRSDKGWKVPFVVDRFKGVRLSYDLMDVDGNVLIKANTRITLRIAK
KLYADGLREYLVPFAGISGLFVATDLVDPASGAVIVSAGEAIAAEHIVKLELFDISEIAF
LNIDFLTVGPYVLNTLFLDRHITQEDALFEIYRVLRSGESPNLEAVKSFFKGLFFEPDRY
DLSVVGRIKLNSHLRLDIDENLTVLTKDDIVHVIKKLVLLPDGEGVVDDIDHLGNRRVRS
VGEFIENQFRVGILRLERMIMDYMSSVNFDNAVPCDFVNPKILATVLKDFFSSSQLSQFM
DQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSL
AIYAKINKYGFIESPYRKVIDGVVTDSVEYLLATQESDYYIADAGAALDENNRFVDDMLY
CRHGGNFVMVKREDVNYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKA
EAPLVGTGMESVVAAGSGAVVLAKRDGVVHRVDGSYIVIRAFDKNKDEYLGVDIYKLRKF
QRSNHNTCINQRPIVKIGDYVRTNDVIADGAAIDRGELALGKNVLVAFMSWQGYNFEDSI
VISSDVVKRDVFTSIHIEEFECVVRDTPLGPEKIMRSVPDVNEESLSHLDDVGIVNIGAE
VSAGSVLVGKVTPRPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPPDVEGTVIDVHVFVR
RGVEENDRSLLIKQSEVNSFRKERDYEIDVVSEYFYDELKKLLCSADLPLNGHADVESLL
AAKSLEALWEIGLSNPKISAKVADMKGKFDELITEAHSKFDQKIDKLNYGYDLPQGVLTI
VKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSLGVPSRMNI
GQILETHLGWAAVNLGHRVGRMLDSGEEEGPVVESIRSFLSEVYEGQKLKEDVASMSDEA
LLKFANRLRRGVPMAAPVFEGPKDAQISRLLELADVDPSGQVDLYDGRSGQKFDRKVTVG
YIYMLKLHHLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQ
EMLTVKSDDIVGRVRIYESIIKGDSNFECGIPESFNVMVKELRSLCLDVVLKQDKEFTSS
KVE
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgcgggtgattctggtcccgggtatgtgctgaatgattttgatgctgttcct
aggctttcttacgcgaggtctatagacattcgcgattctttgagtgatttgataagaata
cagagagattcttatgatgccttcatagggattgatgagggtagtagtggcggtatacaa
agcatattccagtcgatgtttcccatacgagatcctttggggagggctgtactcgagttc
gtgagttgtaatattggggagcctcaatatgatgaatacgagtgcataaaacgtgggata
acgttttctgtgccgatgcgcataactcttcgttttgttgtgtggaaggtgcaggaggtt
tcattcaaggaagttaagtacgtcgtagatgagggcactcttgagaggagtgttaagtac
atgaaggagcaggaggtgtctattggcgatcttccgatgatgacatcatatggaaccttc
atcatcaatggtatagagagggttattgtttcccagatgcatcggtctcctggtgtcttt
tttgacagtgataaggggaagacatacagttctgggaagctaatttattctgcgcgtatc
atcccttacaggggctcgtggcttgattttgaatttgacatcaaggacatcatttacttc
cgaatagataaaaagcgtaaactcccggtcacctacttattaaaggcccttgggatgtct
aacaatgatatcctagacacattttatgacaaagttctttacgtaagaagtgataagggt
tggaaggtaccctttgtagtggatcgctttaagggtgtgaggctgtcttatgatcttatg
gacgtagacggtaatgtgctgattaaggcgaatactaggattactctcaggattgctaaa
aagttatatgctgatggcttaagggaatatttggtgcctttcgcggggatttctgggttg
ttcgtggcaactgacttggtggatcctgctagtggtgctgtgattgtttctgcgggtgag
gcgatagctgcggagcacattgtaaaattagaattgtttgatatcagtgagatagcgttt
ttgaacatagactttttgacagttggtccttatgttctgaatactctatttttggacagg
catataacgcaagaggatgcgctgtttgagatatatagggtattgcgttctggagaatct
ccaaatttagaagctgtgaagtcattctttaaagggctcttttttgagccagataggtat
gatttgtcagttgttggaagaattaagctgaacagtcatttgcgcttagatatagatgag
aatctcactgtccttactaaggatgacatagtacacgtaataaagaagttggttttattg
cctgatggtgagggtgtagttgatgatatagaccatcttggtaataggcgggtaaggtct
gtaggggagttcatagagaatcaattccgggttggtatattgcggctcgagagaatgatt
atggattacatgtcctcggttaactttgataatgcggtgccgtgtgactttgttaatcct
aagatcttggctacggtgttgaaagactttttcagttcttcgcagctttcgcagtttatg
gatcagactaatcctctctcagaggttacgcataagcgtaggttatcggcgttgggtcct
ggtggtttaacgagagaaagggctggttttgaagttcgtgacgttcaccctacgcactat
ggtaggatatgtcctattgaaactccggaaggacagaatattggtcttattagtagtctc
gctatatatgctaagataaacaagtatggctttattgaaagcccgtacaggaaggttatt
gatggcgtagttactgattctgtagagtatcttttggctacacaggagagtgactattat
attgctgatgcgggcgctgcccttgatgagaataaccgttttgtggatgatatgctgtat
tgtcgccatggcggtaacttcgtgatggtgaagcgtgaagacgtgaattacattgatgta
tctccaaagcagatagtttctgttgcagcgtcgctgattccgtttttggaaaacaatgac
gcgaaccgtgctctaatgggttcaaatatgcagcgtcaggcggtgccattactaaaggct
gaagcgcctttggtgggtactggtatggaatcagttgttgcggcaggttcaggtgccgtc
gtattggctaagcgcgatggtgtagtacacagggttgacgggtcttatatcgtaatcagg
gcttttgataagaataaggacgagtatcttggtgttgatatatacaaactgagaaagttc
cagcgttcaaatcataatacatgtatcaatcagaggcctatagttaagataggggattac
gttaggactaatgatgttattgccgatggtgccgctatagatcgtggtgagttggcgttg
ggtaaaaatgtccttgttgcctttatgtcatggcagggttacaactttgaggactcgata
gtaatatccagtgatgttgtgaagagggatgtcttcacttcaattcacatagaagagttt
gaatgtgttgtgcgggatactccgcttggtcctgagaagatcatgcgttcggtgccggat
gtgaatgaggaaagtctcagtcatctggatgatgttggtattgtaaatatcggggctgag
gtttctgctggtagtgttttggtgggtaaagtgactccgagaccgccggtttcattgccg
cctgagacgaagcttttggtgacaattttcggtgagaaggtattcgattgcgttgattct
tctttatatttgccgccggatgttgagggaacggttatagacgttcatgtgtttgttaga
aggggcgttgaggagaatgatagatctttgcttatcaagcaaagtgaggtgaatagcttc
aggaaggagcgtgactacgaaatagatgttgtcagtgagtacttctatgatgagctgaag
aagttgctttgtagtgctgatttgccgttgaatggtcatgctgatgtagagagtcttcta
gctgcgaagtctttggaagcgttatgggaaattggtctatcgaatcctaagatatctgcc
aaagttgctgatatgaagggtaaatttgatgagttgattactgaagctcatagtaaattt
gaccaaaagatagacaagcttaattacggctatgatttgccgcagggtgttctgactatt
gtaaaggtctttgtggctgttaagcataatttgcagccaggagataaaatggctggtcgg
catggtaacaagggggttatttcgagaatagttcctgttgaggatatgccgcatctagag
gatggtacgcccgtggatataatcttgaattctctgggtgtaccttcgcgtatgaatata
gggcagatccttgaaactcacttgggttgggctgcagtgaatttgggtcatagggtaggt
aggatgcttgattcaggggaagaagaagggccggtagttgagagtattcgtagctttttg
agcgaagtatatgaagggcaaaagcttaaggaagatgtggcttctatgtcggatgaggct
ttgctgaagtttgccaataggctcagaagaggtgttcctatggctgctccggtgtttgag
ggtccgaaggatgcgcagatttcccggcttttggaattagcggatgttgatccgtctggg
caggtggatctttatgatgggcgttcagggcagaagtttgatcgcaaggtaactgttgga
tacatttacatgttgaagctccatcacttggtggatgacaagatacatgctaggtctgtt
ggtccgtatggtctggttactcagcaacctcttggaggaaagtcgcactttggtgggcag
agatttggggaaatggaatgctgggcattgcaggcctatggtgctgcttatactttgcag
gaaatgctaactgtcaaatctgacgatatcgtaggtagggtaagaatctatgaatccata
attaagggggatagcaacttcgagtgtggtattcctgagtcgtttaatgtcatggtcaag
gagttacgctcgctgtgccttgatgttgttctaaagcaggataaagagtttactagtagc
aaggtggagtag
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