Abyssogena phaseoliformis symbiont: CVPH_0128
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Entry
CVPH_0128 CDS
T07717
Symbol
holB
Name
(GenBank) DNA polymerase III delta prime subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
aphf
Abyssogena phaseoliformis symbiont
Pathway
aphf03030
DNA replication
aphf03430
Mismatch repair
aphf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aphf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CVPH_0128 (holB)
03430 Mismatch repair
CVPH_0128 (holB)
03440 Homologous recombination
CVPH_0128 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aphf03032
]
CVPH_0128 (holB)
03400 DNA repair and recombination proteins [BR:
aphf03400
]
CVPH_0128 (holB)
Enzymes [BR:
aphf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CVPH_0128 (holB)
DNA replication proteins [BR:
aphf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CVPH_0128 (holB)
DNA repair and recombination proteins [BR:
aphf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CVPH_0128 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
Motif
Other DBs
NCBI-ProteinID:
BBB22315
LinkDB
All DBs
Position
126623..127636
Genome browser
AA seq
337 aa
AA seq
DB search
MNLPWHANAWSKLQKMIDQDHLPHALLITGAEKIGKFELMQQLVGVLLKDNVIIRKDNIR
EDLDYPVLIRRSNYPNMVYCRAGEMVEKSKNRSKDIRIDQVRVFCDALNKTADQLQIGVV
FYGDQMNMNAANGLLKTLEEPRENTLIIILAHHVENLPATIVSRCQNIHIAPAYGQQTCQ
WLIEHIGKTQNADFDIPQLLENTHGVPFKVLSELSDGSFIHYQNYQNQLLNIAINPLMVT
QIKDFEGDELVVLNCLQNIIIEGIRLKTIHQEGGLIELNQVIKAVKFEFLFKLLDDIYHA
IKLSKTTVNIKLLLDSILIVWSHIVHLKQYPQITQNA
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttccttggcacgcaaatgcatggtctaaactacaaaagatgattgatcaagat
catctgcctcatgcattattgattacgggtgctgaaaaaattggcaaatttgaactcatg
caacaattagtgggcgtgttgttaaaagataacgttattattagaaaagacaatattaga
gaggatttggattatcctgtattaatcaggcgttcaaattatcctaatatggtttattgt
cgcgcaggagagatggttgaaaaaagcaaaaacaggtctaaggatattcgtattgaccaa
gtgcgtgttttttgtgatgctttgaacaaaactgctgatcaattacaaattggggttgtt
ttttatggcgatcaaatgaatatgaatgccgccaatggtttgttaaaaacccttgaagag
cctagagaaaatacgctcattattattttggcgcaccatgttgaaaatttgccagccacg
attgtatcaaggtgtcaaaatatacatattgcaccggcgtatggtcagcaaacttgccag
tggttaattgaacatattggtaaaactcaaaatgcagattttgatattccgcagttatta
gaaaatacacatggcgttccatttaaggtgttgtctgagttgtctgatggcagttttatc
cattatcaaaattatcaaaaccagttacttaatattgccattaatccattaatggtgaca
cagattaaagattttgaaggtgatgagttggtggttttaaattgtttgcaaaatattatt
attgaaggaatcaggttaaaaaccatccatcaagaaggcggactgattgagcttaatcaa
gtcatcaaggcagtaaaatttgagtttttatttaaactacttgatgatatttatcatgcc
attaaactgtcaaaaaccaccgttaatattaagttattattggatagtattttaattgta
tggtcgcatattgttcatttaaaacaatatccacaaattacccaaaatgcataa
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