Abyssogena phaseoliformis symbiont: CVPH_0439
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Entry
CVPH_0439 CDS
T07717
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
aphf
Abyssogena phaseoliformis symbiont
Pathway
aphf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aphf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVPH_0439 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aphf03019
]
CVPH_0439 (pnp)
03016 Transfer RNA biogenesis [BR:
aphf03016
]
CVPH_0439 (pnp)
Enzymes [BR:
aphf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CVPH_0439 (pnp)
Messenger RNA biogenesis [BR:
aphf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CVPH_0439 (pnp)
Transfer RNA biogenesis [BR:
aphf03016
]
Prokaryotic type
tRNA degradation factors
CVPH_0439 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_2
S1_RRP5
aRib
Motif
Other DBs
NCBI-ProteinID:
BBB22533
LinkDB
All DBs
Position
complement(446231..448324)
Genome browser
AA seq
697 aa
AA seq
DB search
MDMNIKIKSFVMGKHTITLETGRIARQAHGAVLASMDDTQVLVTVVGSKEMRPGQDFFPL
SVDYIEKTYATGKIPGGFLKRETRPSEKETLTSRLIDRPIRPLFPNGFMNEIQVLITVIS
ANSEVDPDIISILGVSAALSISGVPFSGPIGGARVGYSKGEYILNPTYTELADSDLDMVV
AGTDEAVLMVESEANELSEEIMLGAVMYAHEQYQVAITNIAEFVAQVGVQKWDWEAPITN
EVLLSDIKSQFGEQINEAYQIKEKLDRYAKVGEIKAAAIEALANEDENGNSIKEVGQYFK
KVEKSTVRERILNNDPRIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGS
KREAQLIEKLESSERQNDYFLFHYNFPPYCVGETGRVGTTKRREIGHGRLARRGIAACLP
SIEEFPYTVRVVSEITESNGSSSMASVCGSSLSLMDAGVPIKAPVAGIAMGLVKEGDRFT
VLTDILGDEDHLGDMDFKVAGTSRGVNALQMDIKIQGITREIMEIALKQAKEARLNILGQ
MNQVICKPNMSSKNALKMAVIKIQTDKIRDLIGKGGETIKGIISTSGASVDVDDNGNVNI
FANDQKAFDTAMQMVKDVTATPEIGKVYTGKVVKIVEFGAFINIMPNQDGLLHISEIAHE
RVEKVENHLKEGDEIDVKVLDLDRGRIKLSRKALLEK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggatatgaatatcaaaataaaaagctttgtcatgggcaaacacacaatcacattagaa
acaggtcgtattgccagacaagcacatggtgcagtattggcaagcatggatgacacacaa
gtattggtaaccgttgttggttctaaagaaatgcgccctgggcaagatttttttccgctg
tctgttgattatattgaaaaaacttacgcaactggaaaaattcctggtggcttcttaaaa
cgtgaaaccaggcctagcgagaaagaaacgctaacttctagactgattgaccgcccgatt
cgtcctctgtttccaaatggtttcatgaatgaaatacaagtgcttattacagttatttct
gcaaactccgaggttgacccagatattatttcaatattaggcgtgtctgctgcattaagc
atttcaggcgtgccatttagtgggccaattggtggtgctcgtgttggttattctaagggt
gaatacatccttaatccaacttacactgaactggctgattcagatttggacatggtggtt
gcaggtactgatgaggcggtactaatggttgaatcagaagccaacgagctttctgaagag
attatgctaggtgcagttatgtatgcacatgaacaataccaagttgctattaccaatatt
gctgagttcgttgcacaagttggtgtgcaaaaatgggactgggaagcgcctataactaac
gaggttttattaagtgacatcaaatcacaatttggcgaacagattaatgaagcttaccaa
attaaggaaaaacttgaccgttatgccaaagttggtgaaatcaaagcagctgcaattgaa
gcgttggcaaatgaagatgagaatggaaattctattaaggaggttggccaatactttaag
aaagttgagaaatcaactgtacgtgaacgcatcttaaataacgatccacgtatcgatggt
cgtgataatgaaaccgttcgcgagttaaaaatcgaaacaggcgttttagaaaatacacat
ggttctgctttgtttactcgtggtgaaacgcaagctttagtggtaactacactagggtct
aaacgtgaagcccagttgattgaaaaattagaatcttctgaacgtcaaaatgattacttc
ttatttcattacaactttccaccatactgcgtgggtgaaactggtcgtgtaggcaccacc
aaacgtcgtgaaattggccatggccgtttagcacgccgtggtattgctgcttgcttacct
tcaattgaagagtttccatacacagttcgtgtggtatcagaaattactgaatctaatggc
tctagctctatggccagtgtttgtggttcgtcattatcattaatggatgcaggtgtgcca
atcaaagcgccagttgctggtattgctatgggtttggtcaaagaaggtgatagatttacc
gtattgactgatattttaggcgacgaggatcacttaggtgatatggactttaaagtagca
ggcacatcacgtggtgtcaatgcattacaaatggacattaaaatccaaggcatcactcgc
gaaattatggaaattgctttaaagcaagccaaagaagcaagattgaacattttaggacaa
atgaatcaagttatttgcaaacctaacatgtcaagcaaaaatgcacttaaaatggccgtt
attaaaattcaaactgataagattcgtgatttaatcggcaaaggcggggaaaccattaaa
ggtattatttcaacttctggcgctagtgttgatgtagatgacaatggcaatgttaatatt
tttgccaatgaccaaaaagcttttgatacagccatgcaaatggtgaaagatgtgactgct
acacctgagataggtaaagtttacacaggaaaagttgttaaaattgttgagtttggcgct
tttattaacattatgcctaatcaagatggcttgctacatatctctgaaattgcccatgag
cgtgttgagaaagtagaaaatcatcttaaagaaggtgatgaaattgacgttaaagtctta
gatttagacagaggtcgtattaaattatctcgtaaagcgttattagaaaagtaa
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