Abyssogena phaseoliformis symbiont: CVPH_0899
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Entry
CVPH_0899 CDS
T07717
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
aphf
Abyssogena phaseoliformis symbiont
Pathway
aphf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aphf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CVPH_0899 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aphf03400
]
CVPH_0899 (xseA)
Enzymes [BR:
aphf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
CVPH_0899 (xseA)
DNA repair and recombination proteins [BR:
aphf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
CVPH_0899 (xseA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
Lipid_desat
YabA
Motif
Other DBs
NCBI-ProteinID:
BBB22882
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All DBs
Position
907789..909189
Genome browser
AA seq
466 aa
AA seq
DB search
MFNIDEIYTISSFLSLCNKTIENKIPTCWLQGEISNLARPASGHWYFSLKDSKTQVRCAL
FRLNQRHIKFGPENGMEVLVHAAPTLYEARGDFQLIIQHLEPVGVGNLNLAFEQLKNKLA
DEGLFDNIHKKPLPNIINTIGVISSSTGAVIRDIIKVLNKRYPFADILLFNSMVQGQGSV
QTLTNALNAADQSGKCDVIIIARGGGSLEDLWAFNEEVLVRAIFKASTPIISAIGHETDT
TITDFVADIRAPTPSAAAMLVTPDRLELLANADKLCTQLHQSYQQTLYDYQSDLNQLKLR
IPSPNRQIAFFSQKLDHASINLNIHVKSALALNNAKLNSIFTTLKQHSPIETIKHAKVLN
QVSFAQLKYQIKQIISTNNSALHLANEKLRKAMAALTDKHKTILSIQTNSLHHLSPLNTL
SRGFSITTNTKNQVLSSTTNIKINQTIITQLTDGKLYSNIEKIEKN
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatattgatgaaatttacacaatctctagttttttgtccttatgcaataaaacc
attgaaaataaaatccctacttgttggctgcaaggggagatatccaatttagcacgccca
gcatcaggtcattggtatttttccctcaaagacagtaaaactcaagtgcgctgcgcttta
tttcggctcaatcagcgccatattaagtttggccctgaaaatggcatggaagttttagtt
cacgccgcacctactttgtacgaggcacggggtgattttcagctcatcatccaacatctt
gaacctgtaggtgttggtaatttaaaccttgcctttgagcaactaaaaaacaagcttgct
gatgaaggtttgtttgacaacattcataaaaaaccactacctaatattattaataccatt
ggtgttatttcttcatcaacaggtgctgttattcgggatattattaaagtactgaacaag
cgctatccctttgctgatattttattatttaattcaatggttcaaggtcaaggctcagtg
caaacactcacaaacgctttaaatgcggccgaccaatcaggcaagtgcgacgttattatt
attgccagaggtggtggctcattagaagacttatgggcgtttaatgaagaagtattggta
agagcaatctttaaagcaagcacgccaattattagcgcaattggtcatgaaacagatacc
acaattactgattttgttgctgatattcgcgcacccacaccaagcgctgctgccatgctg
gtcacacctgatcggctagaattactcgccaatgctgataagttatgcacacaactacat
caatcttatcagcaaactttgtatgattatcaatctgaccttaatcaacttaaattaaga
ataccaagcccaaataggcaaattgctttttttagtcaaaagcttgaccatgcaagcatc
aatcttaacatccatgtaaaatcagcacttgccttaaataatgcaaaacttaactcgata
tttaccaccttaaaacagcattcccctattgaaactattaaacatgccaaagttttaaac
caagtatcttttgctcagctcaaataccaaatcaagcaaataattagtaccaataatagc
gccctacatttagcaaacgaaaaactgcgaaaggcaatggccgctttgaccgataaacac
aaaaccatattatccattcaaaccaactcgcttcatcatttatcaccacttaatacactt
tcgagagggtttagcattaccactaacacaaaaaatcaagtattatcctcaacaactaat
attaaaatcaaccaaaccattatcactcaattaactgatggaaaactgtactctaatatt
gaaaaaattgaaaaaaattaa
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