Abyssogena phaseoliformis symbiont: CVPH_1143
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Entry
CVPH_1143 CDS
T07717
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aphf
Abyssogena phaseoliformis symbiont
Pathway
aphf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aphf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVPH_1143 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aphf03019
]
CVPH_1143 (deaD)
03009 Ribosome biogenesis [BR:
aphf03009
]
CVPH_1143 (deaD)
Enzymes [BR:
aphf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CVPH_1143 (deaD)
Messenger RNA biogenesis [BR:
aphf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CVPH_1143 (deaD)
Ribosome biogenesis [BR:
aphf03009
]
Prokaryotic type
rRNA helicases
CVPH_1143 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
CMS1
DFP
UvrA_inter
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBB23066
UniProt:
A0A7U3V2U9
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All DBs
Position
1137600..1139399
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AA seq
599 aa
AA seq
DB search
MSENKSGHKSPSKFECLGLSNTILKVLDSIGYETPSPIQEQCITHLLNGEDIIGQAQTGT
GKTAAFALPLLDKIDLNLNAPQLLILTPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQS
YDIQLRPLKRGVHAIVGTPGRVMDHIKKGTLKLDNLKFFVLDEADEMLKMGFIDDIKWVM
QRIPEQRQIALFSATMPSVIKKVAEQFLNQPKIVKIKTKTETATTITQKYCMVGGLSQKL
EALTRILEVTTFDAMIIFVRTKTLTTELAEKLSARGFSAEAINGDIQQNQRERIITNYKK
GKIDILIATDVAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGDAILFVSNRE
RRMLNTIERVTRQKITPIELPSAKIINAKRIETFKQNIAQTINNQNLDIFEKLVSEFQQE
NPEIETSKISAALAFIAQGNEPLLLSEKKLNFGSNQTPKEEKIIPAKADPLKDFPKIPMC
RYKLEVGNNNNVKPGNILGAIANEADMDSEYIGSIQIFDHFSTIDLPDELPNEVFEVLKK
TVVCGKRLNIVELTEKNNKATIGARMGRRNFGRGKFSKGKGNNRRNNKDYHGRKPKFSR
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaataaatctggccataagtcgccatctaaatttgaatgtttaggattgtct
aataccattttgaaagtattggattctattggctacgaaaccccttctcccattcaagag
caatgcatcactcacttactaaatggcgaagacattatcggtcaagcacaaacaggtaca
ggaaaaacagctgcttttgccttgccattactagacaagattgatcttaatcttaacgca
ccacaattattaatcttaacgcccacccgtgaacttgccattcaagtatcagaagcggta
caaacctatgcacgaggcatgaaaggttttcatgtgttgcctatttatggtgggcaatct
tatgacatccaactaagaccacttaaacgtggtgtgcacgctattgttggtacgcctggt
cgggtgatggaccatattaaaaaaggcactctaaaactagacaacctaaaattcttcgta
ctagatgaagctgatgagatgcttaaaatgggttttattgatgacattaaatgggtcatg
caacgcattcctgaacaacgacaaattgctcttttttctgccaccatgccaagcgttatc
aaaaaagtagctgaacaatttttaaaccaaccaaaaattgttaagataaaaactaagaca
gaaacagcaaccaccattacccaaaaatactgcatggttggtggcttatcacaaaaatta
gaagccttaactcgtattcttgaagtcactacctttgatgcgatgattattttcgttaga
accaaaacactcacgacagaattggcagagaaattatctgcccgtggcttttcagcagaa
gccattaacggcgatattcaacaaaaccaacgagagcgtattatcactaactacaaaaaa
ggcaaaattgacatccttattgccactgatgttgccgcccgtggtttagatgtagaacgc
atctcgcacgtggttaattacgacattcctcaagatgctgaatcttacgtacaccgcatt
ggcagaacaggacgcgcaggccgaaaaggtgatgcaattttattcgtatcaaaccgagaa
agacgcatgcttaataccattgagcgcgttactcgccaaaaaatcacgcccattgagctg
cctagtgcaaagattattaacgccaaacgcattgaaacattcaaacaaaacatagcacaa
accatcaacaatcaaaacttagacatatttgaaaaattagtcagtgaatttcagcaagaa
aacccagaaattgaaacctcaaaaatctctgccgccttagcatttattgcgcaaggtaat
gaaccgttgctgttatcagaaaaaaagctaaactttggtagcaatcaaacaccaaaagaa
gaaaaaataatccctgccaaggccgacccactaaaagactttcctaaaattccaatgtgt
cgctataagcttgaagtgggcaataataataatgtcaagccaggtaatattttaggtgct
attgccaatgaagctgacatggacagtgaatatattggctcaattcaaatttttgatcat
ttctcaaccattgacttaccagatgagctgccaaacgaggtatttgaggttttaaaaaag
accgtggtttgtggcaagcgcttaaacattgtcgaactcactgaaaaaaacaacaaggcc
actattggagcacggatgggaaggcgtaattttggtcgtggaaaattctccaagggtaaa
ggcaacaatcgacgtaacaataaagactatcacggcagaaaaccaaaattttcacgctaa
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