Abyssogena phaseoliformis symbiont: CVPH_1151
Help
Entry
CVPH_1151 CDS
T07717
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
aphf
Abyssogena phaseoliformis symbiont
Pathway
aphf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aphf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CVPH_1151 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aphf03400
]
CVPH_1151 (sbcB)
Enzymes [BR:
aphf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
CVPH_1151 (sbcB)
DNA repair and recombination proteins [BR:
aphf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
CVPH_1151 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CVPH_1151 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CVPH_1151 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
BBB23070
UniProt:
A0A7U3VTX3
LinkDB
All DBs
Position
1146949..1148364
Genome browser
AA seq
471 aa
AA seq
DB search
MKTFYWYDYETFGISPKIDRISQFAGIRTDENFNILDEQRFYCKPTHDCLPSPEACFITG
ISPQLCEQKGMIEHEFIKKIHAQFSTPNTCIVGYNSIRFDDEFTRYTLYRNFIDPYAWHW
QNGNTRWDILDVVRLCYALKKDASLKWVHDEQGKPIFKLDQLSLANDIEHANAHDALADV
RATIAIAKIIKQTQPQLFDYGFSLREKKTVASKISLFEPILHTTGMYPAQLSCTRLSVAL
AYHPEYNDRALVFNLDQDPCILLELDIEALKTLIFTKQSKLPKEQKSLQIKELIFNKSPM
FVPNVYKLEPKIVKQLNIDMNQCMQHLAFIKDNQLKISKVVQDLYKNDQKRIATKDVDQS
LYDGFIDNADKRICNQIQALSVKELGVFHPKFKDKKLSTLLMHFKARNYPNTLTEDEKEA
WFETVQGRVQTGENGYTTIDDYLTRISAIREQHPDQEELWQQLETYSKSFF
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacattttattggtacgactatgaaacttttggcatttcgccaaaaatagataga
atctcacaatttgctggcattagaactgatgagaattttaatattctagatgagcaaagg
ttttattgcaagccaactcatgattgcttgccatcgcctgaagcttgttttataactggt
attagcccgcaattatgcgaacaaaaaggcatgattgagcatgaatttatcaaaaaaatt
catgctcaattctcaacaccaaatacctgtattgtgggctacaattcaattcgttttgat
gatgaatttacacgctatactttgtatcgtaattttatcgacccttatgcttggcattgg
caaaatggcaatactcgttgggatattttagatgttgtgcgactgtgttatgcgcttaaa
aaagacgcaagccttaaatgggttcatgatgaacaaggcaagccaatatttaaacttgat
caattgtcacttgctaatgatattgagcatgcaaatgcacacgatgctctagctgatgta
cgtgctactattgccattgctaaaattatcaagcaaacacaacctcaattatttgactac
ggttttagcttaagagaaaagaaaacagtcgcctcgaaaattagcctatttgagccaata
ttacatacaactggcatgtatccagcacaactgtcttgtactcgattgtctgttgcactg
gcttatcatcctgagtataacgaccgagcgctggtgtttaaccttgatcaagacccttgt
attttgctagaacttgacattgaagcacttaaaaccttgatatttaccaagcaatccaaa
ctaccaaaagagcaaaaaagcttacaaattaaagagttaatttttaataaaagtccgatg
tttgtccctaatgtttataaacttgagccaaaaattgttaagcagttaaatattgatatg
aatcaatgtatgcagcatctcgcttttatcaaagataaccaactcaagattagtaaagtc
gtacaagatttatacaaaaacgatcaaaaacgcattgcaacaaaagatgtagaccaatcg
ctttatgatggttttattgacaatgctgataagcgtatttgcaaccaaattcaagccttg
tctgttaaagaattaggcgtgtttcatccaaaatttaaggacaaaaaactctcaacattg
ctcatgcactttaaagctagaaattatcccaatacgttaactgaagacgaaaaagaagct
tggtttgaaactgtacaagggcgagtccaaacgggtgaaaatggctatacaaccattgat
gattacctaacaagaattagcgcaataagggaacagcatccagatcaagaagaattatgg
caacaacttgaaacttatagcaagtcgttcttttag
DBGET
integrated database retrieval system
