Abyssogena phaseoliformis symbiont: CVPH_1389
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Entry
CVPH_1389 CDS
T07717
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
aphf
Abyssogena phaseoliformis symbiont
Pathway
aphf03030
DNA replication
aphf03410
Base excision repair
aphf03420
Nucleotide excision repair
aphf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aphf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CVPH_1389 (polA)
03410 Base excision repair
CVPH_1389 (polA)
03420 Nucleotide excision repair
CVPH_1389 (polA)
03440 Homologous recombination
CVPH_1389 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aphf03032
]
CVPH_1389 (polA)
03400 DNA repair and recombination proteins [BR:
aphf03400
]
CVPH_1389 (polA)
Enzymes [BR:
aphf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CVPH_1389 (polA)
DNA replication proteins [BR:
aphf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CVPH_1389 (polA)
DNA repair and recombination proteins [BR:
aphf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CVPH_1389 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CVPH_1389 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
WHD_BrxR
PylC-like_N
Motif
Other DBs
NCBI-ProteinID:
BBB23251
LinkDB
All DBs
Position
complement(1353916..1356645)
Genome browser
AA seq
909 aa
AA seq
DB search
MPHKLILMDGSAFLFRAYFSTLKQNLTNQDGFPTGAMFGVINAIKRLQKQYPEAKIITIF
DAKGKNFRHDIYPQYKAHRKPTDSELVMQIEPLYEIIKAMGFHFMCVPDVEADDVIATLS
CCANQNNIKTIIASGDKDLMQLVGANISQLDMKGAVYDRQGVIEKMGVAPEKILDLLALT
GDSVDNIPGVPSVGPKTAIKWLQTYSDIAGVKENSIQIKGKVGEKLRDNFDLLDLSHRLV
KLKFDVALPCNILDDESGQDIAKLADLYQQYGFSMWLKQLGNVPILEQVGTQAIEIAENT
GNVVDVLEGYSQTLVLDLDVFDTMLNRLKTSKTFVFDLETTSLDYMNAAIVGWVFLVDKD
SFYVPVGHDYLDAPRQLDFKAALNQLKPILEDVSIGKVGQNLKYDAHILANYQIDLQGIS
DDTMVKSYCLNSVATRHNMDDLSEYYLNHQTIHFADVAGKGKKQITFNQVNLEIAFPYAC
EDVIVTDLLNHVLDGEIAQYPKLVKLYQNLELPLIKVLLRMERNGVELDVNALSAQQIDI
IQQMKDIQAQAFELAGGVFNLESPKQIQQILFEPEGLGLTPLKKTPKGAPSTNEEALKLL
DHPLVDLILSYRTLTKLNSTYLEALPRQIDLNTHRLHTSYHQAVTATGRLSSSNPNLQNI
PIRTTQGARIRGAFIAGKDNVIIAADYSQIELRIMAQLSQDEGLLDAFNHDKDVHSTTAS
TMFNVPIDEVKKEHRWRAKAINFGLIYGMSAFGLSKKIDVSRTEAKQYIDAYFDNYPSVL
HYMDNTKESAKVQGYVETVMGRRLYLPQINAKNKMLQQHALRTAINAPMQGSSADIIKKA
MLDVHAWIGQNNPNIRMIMQVHDELVFEVSTSKADEFAHKIQDLMAKAYPLDIPLKVNVG
IGSSWQQAH
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgccacataaactaattttaatggatggctcggcttttttgttccgagcttatttttct
acgctaaagcaaaacttaaccaatcaagatggttttccaacaggcgctatgtttggtgtt
attaatgccattaaacgccttcaaaagcagtatccagaggctaagataattaccatattt
gacgccaaaggtaagaactttagacacgatatttacccgcaatacaaagcacatagaaag
ccaactgatagcgaattggtgatgcaaattgagcctttgtatgagattattaaagccatg
gggtttcattttatgtgtgtgcctgatgttgaagcggatgatgtgattgccaccttgagt
tgctgtgccaatcaaaataatattaagactattattgctagtggtgataaagatttaatg
caattagtgggcgctaatatttctcaattagacatgaaaggcgctgtgtatgatcgccaa
ggtgtgattgaaaaaatgggtgttgcaccagagaaaattttagaccttttagccttaact
ggggatagtgtagataatattcctggtgtgcctagcgttggtcctaaaacagccattaaa
tggttgcaaacttatagcgatattgcaggtgttaaggaaaattcaatacaaattaagggc
aaggtgggtgaaaagttacgtgataattttgatttgttggatttatctcatcggttagtt
aagcttaaatttgatgttgccttgccttgtaatatcttggatgacgagtcaggacaagat
attgccaaactagctgatttgtatcagcagtatggcttttcgatgtggttaaaacaactg
ggcaatgtgcctatactagagcaagtagggactcaagccattgaaatagctgaaaatact
ggtaatgtggttgatgttcttgagggctattcacagacattggtgctagatttagatgtg
tttgacacaatgcttaatcggcttaaaacctcaaagacgtttgtatttgacttagaaacc
acgtcgctagattatatgaatgccgccattgttggttgggtatttttagttgataaggat
agtttttatgtgcctgttggtcatgattatttagatgcgccaaggcagttggattttaag
gctgcgcttaatcagctaaagccaattttagaggatgtgtctattggaaaagttgggcaa
aatctaaaatatgatgcacacatcttagccaattaccaaattgatttgcaaggcattagt
gatgataccatggtgaaatcttattgcttaaattcagttgccacaaggcataatatggat
gatttgagtgaatattacttgaatcatcaaaccattcattttgctgatgtggcaggcaaa
ggcaaaaaacaaattacttttaatcaagtaaatttagaaattgcctttccttatgcctgt
gaagacgtgatagtgacggatttgttaaatcatgtattggatggggaaattgcccaatat
cccaagttagttaagttgtatcaaaacctagaattgccattgattaaagtcttgttgcgt
atggagcgtaatggtgttgaattagacgtgaacgcactaagcgcccaacagatagacatt
attcaacaaatgaaggatattcaggctcaagcgtttgagctggcaggtggtgtgtttaat
cttgagtcgcctaagcaaattcaacaaattttatttgaacccgaaggtttaggactaacc
cctttgaaaaaaacccccaaaggcgcaccttctacgaatgaagaggcgttaaagctttta
gaccatccattggttgatttaatattaagctaccgtacattaaccaagcttaattccacg
tatcttgaagcattgcccaggcaaattgatttaaatacgcataggcttcatacttcttat
catcaggcagtaactgctacaggtcggttatcatcgagtaatccaaatttacagaatatt
cctattcgcaccacacaaggtgcgcgtattcgtggtgcgtttattgctggtaaagataac
gttattattgctgctgattactcgcaaattgaactgcgaattatggcgcaattatctcaa
gatgaaggcctattagacgcttttaatcatgataaagacgtgcatagtacaacggcatca
accatgtttaatgtaccaattgatgaggtgaaaaaagaacatcgttggcgtgctaaggcc
attaattttggcttaatttatggcatgagtgcctttggtttgtcaaaaaaaattgatgtt
tccaggactgaagcaaaacaatatattgatgcttactttgataattatcctagtgtgtta
cattacatggacaataccaaagaaagcgcaaaagtacaaggctatgttgaaactgttatg
ggcagacgcttgtatttaccacaaattaatgccaagaataaaatgctacaacaacacgcg
cttagaactgccattaatgcacccatgcaaggctcttcagcagatattattaaaaaagca
atgcttgatgttcatgcgtggattgggcaaaacaatccaaatattagaatgattatgcaa
gtacacgatgagttggtgtttgaagtaagcacatcaaaagctgatgaatttgctcataaa
atacaagacttaatggccaaagcctatccattagatattcctcttaaagtaaatgtgggg
attggcagttcttggcaacaagcacattaa
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