Arcanobacterium phocisimile: JTE88_07770
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Entry
JTE88_07770 CDS
T07205
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apho
Arcanobacterium phocisimile
Pathway
apho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JTE88_07770 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apho03400
]
JTE88_07770 (mfd)
Enzymes [BR:
apho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JTE88_07770 (mfd)
DNA repair and recombination proteins [BR:
apho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JTE88_07770 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QRV01965
LinkDB
All DBs
Position
complement(1709283..1712798)
Genome browser
AA seq
1171 aa
AA seq
DB search
MDLSVLQRLFSSAPQFQELDGHHCDITVPRGASAPLLSAIINRDIAKTHVLVTATGREAD
ELATLLHTFLPEESVAILPAWETLPHERLSPRADTVARRLSTFRRLAHPEEFPPLLAVIV
PVRALLQPVAHGLGELVPVRIKLGDIIDMEDLQEQLVNAAYSRVDMIENRGEFAIRGGII
DIFPPTEAHPLRIELFDDEVDDIRTFAVADQRSLNKRAHVYAPPCRELLLTDDVRSRASE
AMTQLPGAVDMLEKIANGIAVEGMESLMPVLVPSMTPVSELMPKNSRFIVMEPERVVARA
DSLVETTEEFLAAAWNVAVAGGQLPVSVDMASFIALSTARASVIEAGQDWWTIGGLPHPD
ATDFHIHEPQSFGGNVDATIEHVGTLGRQGWQIVLTTQGPGLGRRLAEQIESAGYAVSYV
EDLPEELTAGVIYVAAVPMLTGFVDEERKIAIYGSQDLLQRKKSGFVPQQVMPKRRKNAV
DPLQLKPGDYVVHQRHGVAQFVKLAKRSLGGSSGSQREYVVLEYAASKRGGARDQLWVPT
DQLDYVTKYSGGDSPSLNKMGGADWDKTKAKARAAVKQIAKELIRLYAKRRATKGHAFGP
DTPWQRELEDAFMYVETPDQLTTIEEVKRDMESPEPMDRLISGDVGYGKTEIAVRAAFKA
VQDNMQVAVLVPTTLLVQQHAETFIERYSGFPVRVASLSRFQSAKEAEDVRKGVREGTID
VVIGTHRLITGDVRFKNLGLVIIDEEQRFGVEHKEMLKQLYSSVDVLSMSATPIPRTLEM
AVTGIRQMSTLATPPEERHPILTYVGAHENRQISAAIKRELLRDGQVFYVHNRTQSIHRV
AHEITELVPQARVGVAHGKMSETQLEDVIQAFWDKEIDVLVCTTIVETGLDISNANTLIV
EDAHKLGLSQLHQLRGRVGRGRERAYAYFLYPRDKSMTETAIERLRTIAAHSELGAGIQV
AMKDLEIRGAGNILGGEQSGHIAGVGFDLYLRMVSEAVAQLTGQDKRTEAEQQAEMRIEL
PVEAYVPERWVTSERLRLEIYTKIASAVNEQQRDDVRQELIDRYGKIPVEVDRLFALAAL
REQARSYGVEEITVMGKNLRIAPVVLSDSKHARLRRLYPKAVAKAAIRTILIPLSDLHRS
SHERSVLAAQTMLENDEMIAAVKKIMEQLLA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggatctttcagtattacagcgtctattctcatctgctccgcaatttcaggagctcgat
gggcatcactgtgatatcacagtgccacgtggcgcatcggcgccgctactgtctgccatc
atcaatcgagatatcgcaaaaacccatgttcttgtcactgcaacagggcgtgaagccgac
gaattagcaacgctacttcatacattcttgcccgaagaatcggtcgctattttgcctgcg
tgggaaaccttgccgcatgagcggctatctccgcgtgcggatacagttgcacgccggtta
tcgacgtttcgtcgccttgcccacccggaagagtttccgccattactagcagttattgtt
ccagtacgtgccttgcttcaaccggtagcacatggtctgggcgagcttgttccagtgcgg
atcaagctcggcgatattatcgatatggaagatctccaagagcagctggttaatgccgcc
tactcacgcgtcgatatgattgaaaatcgcggagagttcgccatccgtggtggcatcatt
gatatcttcccaccaactgaagctcatccgttacgtatcgaattattcgacgacgaagtc
gacgacatccgtacctttgcagtggctgaccagcgttctttgaacaaacgcgcacatgtt
tatgctccgccatgccgggaattactgctcactgatgatgtgcgttcgcgggcaagtgag
gccatgacgcagttgcccggtgcagtagatatgttggaaaaaattgccaacggcattgcg
gttgaaggcatggaatcactgatgccagttctggttccgtccatgaccccggtcagtgaa
cttatgccgaaaaactcgcgctttatcgtcatggagccagaacgagtagtagctcgagct
gattcgctggtagaaacaactgaagaatttcttgcagctgcctggaatgtcgcggtggct
ggtgggcagttgccagtttcagttgatatggcgtcgttcatcgcgctgtctactgctcgt
gcgtcggtgatcgaagcaggtcaagattggtggacgataggcggcttgcctcacccagac
gcgaccgattttcatattcacgaaccacaaagcttcggcggtaacgttgatgccacaatc
gaacacgtaggcacgcttgggcggcaaggctggcagatcgtgctcaccacgcaaggtcca
gggcttggtagaagactagctgaacagatcgaatcagcaggctatgcagtctcctatgta
gaagatcttccagaagaacttaccgcgggtgtcatctatgtggcggctgttccgatgctg
accggcttcgtggacgaagaacgtaagatcgcaatctatggctcccaagatttgttgcaa
cgcaaaaaatccggatttgttcctcagcaagtcatgccaaagcggcggaaaaacgccgtc
gatccgctccagcttaagccaggcgactacgtcgttcatcaacgccacggtgtcgcgcaa
ttcgtcaagctagctaaacgatcacttgggggttcatctggcagccaacgcgaatacgtc
gtgctcgaatacgcggcctcgaaacgcggcggggctcgtgaccagctgtgggttcctacc
gatcagctcgattatgtaacaaaatattccggtggtgattccccgtcactaaacaagatg
ggcggtgctgactgggataaaaccaaagcgaaagcgcgcgcagcagtcaaacaaatcgcc
aaagaactcatccggctttacgccaagcgtcgcgcaactaaaggtcatgcgttcggccca
gatacaccgtggcaacgcgaacttgaagatgcgttcatgtacgtcgaaaccccagatcag
ttgaccaccatcgaagaggtcaagcgcgatatggaatcgccagaacccatggatcggctc
atctcgggcgacgtcggttatggaaaaactgagatcgcggtacgcgcagcgttcaaagca
gtccaagataatatgcaggttgccgtgcttgtaccaaccacgttgcttgtccaacagcac
gccgagacattcatcgaacgatactccggattcccggtccgagtagctagcttgtcgcgc
ttccaaagcgcgaaagaagccgaagacgtccgaaaaggcgtgcgtgaaggaacgatcgac
gtcgttatcgggacacatcgactcatcaccggagacgtccgcttcaaaaacctaggtttg
gtcattatcgacgaagaacaacgcttcggcgtcgaacacaaagaaatgctcaaacagttg
tattcgtcagttgatgtgctgtcgatgtcggcaacgccgatcccgcgaacgttggaaatg
gcagtgacgggtattcgccagatgtcgacgctggctaccccgccggaagaacgccacccg
attctcacctacgtgggtgcgcatgaaaaccggcaaatttcggccgctatcaaacgtgaa
ttgttgcgtgatggtcaggtattttatgtccataatcgcacccagtctatccatcgagta
gctcatgagatcaccgaacttgttccacaagcacgcgtgggtgtggcgcatggaaagatg
agtgaaacccagctagaagatgttattcaagcattctgggataaagaaatagacgtactt
gtgtgtaccacaattgtggaaaccggcctcgatatttcgaacgcaaatacgttgattgtc
gaagatgctcataaacttggcttatctcagcttcatcagctacgtggccgagtggggcga
ggaagagagcgcgcctacgcctacttcctgtatccacgcgataagtcgatgactgaaact
gcgattgaacgactgcgtaccattgctgcccattcggagctcggtgccggtatccaggtc
gcaatgaaagaccttgaaattcgtggtgctggaaatattttgggcggtgaacagtccggg
cacatcgccggagtcggattcgatctctatctgcggatggtttcggaagctgtagcgcag
ttgaccgggcaagataaacgcaccgaagctgaacaacaagcagaaatgcgtatcgagctc
cccgtcgaagcctatgttccagaacgttgggtgacttcggaacgcttacggttagagatt
tacacgaagattgcttcggcggttaacgagcaacagcgtgatgacgtgcgccaagaactc
atcgatcggtatggcaagataccggtggaagtagatcggttgttcgcccttgctgcactg
cgggaacaagcgcgctcgtatggtgttgaagaaatcactgtgatgggaaagaacctgcgg
atcgctccggtagtcctttcagactccaagcatgctcgtctgcgccggttgtatccgaaa
gctgtggcgaaagctgcaatacgtacaattctgattccgctatcggatttacatcgatcg
tcacacgaacgtagcgtgcttgctgcgcagacaatgttagaaaacgatgaaatgattgcg
gcagtgaaaaagattatggagcaactgctggcctga
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integrated database retrieval system
