Acyrthosiphon pisum (pea aphid): 100158988
Help
Entry
100158988 CDS
T01076
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
api
Acyrthosiphon pisum (pea aphid)
Pathway
api03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
api00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100158988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
api03019
]
100158988
03041 Spliceosome [BR:
api03041
]
100158988
03009 Ribosome biogenesis [BR:
api03009
]
100158988
03016 Transfer RNA biogenesis [BR:
api03016
]
100158988
Enzymes [BR:
api01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100158988
Messenger RNA biogenesis [BR:
api03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100158988
Spliceosome [BR:
api03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100158988
Complex C
U4/U6.U5 tri-SnRNP related factors
100158988
Ribosome biogenesis [BR:
api03009
]
Eukaryotic type
Pre-60S particles
Helicases
100158988
Transfer RNA biogenesis [BR:
api03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100158988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
100158988
NCBI-ProteinID:
XP_001949040
APHIDBASE:
ACYPI000402
UniProt:
A0A8R2A6L2
LinkDB
All DBs
Position
A1:complement(34546272..34556725)
Genome browser
AA seq
1021 aa
AA seq
DB search
MDDFGDDLFDDFEKPSANSFSAGVQKSNDDKHNADDNTTKRSLILSDDEDDNSKKTKNPD
EISALDLEVSAPRIKIFAVESLDGESCTHEIALPLNFDYIPLNRDTNRKPAKVYEFDLDP
FQKEAIVCIENNQSVLVSAHTSAGKTVVAEYSIALSLRESKRVIYTTPIKALSNQKYREF
HEEFVDVGLITGDVTINPSASCLIMTTEILRSMLYRGSEILKEVGWVIFDEIHYMRDKER
GYVWEETLILLPDNVRLVFLSATIPNARQFAEWVAHLHNQPCHVVYTEYRPTPLQHYLYP
AGGEGLHLIVDENNKFREDNFAAAMNVLSNVTQPVKNWGQPNRPTANNPDNESNCFKLVK
MIMERNFAPVIVFSFSKKDCENYAMQMSKLDFTSDTEKGLIDKLFENATKVLSEEDRKLP
AVINIIPLIRRGIGIHHGGLLPILKETIEILFGEGLLKVLYATETFAMGLNMPARTVLFT
APRKFDGKERRFITSGEYIQMSGRAGRRGLDDKGIVMLIIDEKVSPDTVRNIVQGKPDSL
NSAFHLTYNMVLNLMRVEEIDPEYMLERSFFQFQNQSAIPELVEKVKELSLNKNKIIIKN
EFDVRSYFLIRQQLEDLGKQYHSFITDPKNLVPFCNPGRLVKIKKNDVDFGWGVIVNFKS
VMKSKHEGGGIGEAILNVLLNLERSVENTEEEPIPCAPGKLGEPEIINIRHNMVEDLSSL
RLNKMPNDLKSRDSRMLLYNNVKEVLQRCSTDIPLLDPINDMNIKDAEFDKVIDQIEKFE
SRLFAHPLHEKEDVDELYNQYLEKDKVDRELLKSKTELKKARSLMQMDDLKCRKRILRRM
GYCTAGEVIETKGRIACELSSADELLMTELIFNGVFNDLSVPQTVALLSCFVCDEKSNEL
PAKTAELAGPLRKMQELARKIAKVCKDAKLDIEEDSYVEGFKPFLMDVCYEWCRGATFYQ
ICQMTDIFEGSIIRAMRRLEEILRQLIQASKSIGNTDLENKFSESVKIVKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggatgattttggtgacgatttatttgatgattttgaaaaaccatctgccaattctttt
tctgctggagtacagaaatccaatgatgataaacacaatgctgacgataacaccacaaaa
cgatcattaatactatctgatgatgaagatgataattcaaaaaagacaaaaaatccagat
gaaatatcagctttagatcttgaggtgtcagctcccagaataaaaatatttgctgtagaa
tctcttgatggagaatcatgtacacacgaaatagctcttccattaaattttgattatata
ccattaaatcgagataccaatagaaaaccagccaaagtatatgaatttgatttagatcct
tttcagaaagaagctattgtttgtattgaaaataatcaatctgttcttgtatcagctcat
acatctgctggtaaaactgtagttgccgaatacagtatagctttgtctctaagagaatca
aaacgtgtaatttataccacacctataaaagcattaagtaatcaaaaatatcgagaattt
cacgaagagtttgttgatgttggtcttatcacgggcgatgttactattaatccatcagct
agttgtcttatcatgactacagaaattcttcgttctatgttgtatcgtggttcagagatc
ttaaaagaagtaggatgggtaatatttgatgaaattcattacatgcgtgacaaagaacgt
ggttatgtttgggaagagactttaatattattgccagacaatgtgcgcttggtctttttg
tctgctactatacctaatgctagacagtttgcagaatgggtagctcatttgcacaatcaa
ccatgtcatgtagtatatactgaatatagacctacgccattacaacattacttatatcct
gctggtggtgaaggtttacatctgatagtagatgaaaataacaaatttcgagaagacaat
tttgcagcagctatgaatgttttatctaatgttactcaaccagttaaaaattggggacag
ccaaatcgacccacagctaacaatccagataatgaatcaaattgcttcaagttagttaaa
atgattatggaacgaaattttgccccagtaattgtattttcattcagtaaaaaggattgt
gaaaactatgccatgcaaatgtctaaattagatttcacttcagatactgaaaaggggtta
attgataaattatttgaaaatgctactaaagtcttgtcagaggaagatcgtaaactacca
gcagttataaatataataccattaattcgtagaggcattggtattcatcatggaggtcta
ttaccaatcttaaaagaaactatagaaattttgtttggtgaaggattactaaaagtttta
tatgctactgaaacatttgccatgggcctaaatatgcctgcaagaacagttttatttact
gctcctcgaaaatttgatggcaaagaaagacgatttataacatcaggagaatatattcag
atgtctggacgagctggtagacgaggattggatgacaaaggtattgttatgttgataatt
gatgagaaagttagtccagatactgtcaggaacattgtacaaggaaagcctgattcactt
aattctgcatttcatttaacatacaacatggttttgaatttaatgcgtgtagaagaaatt
gatccagagtatatgttagagagaagctttttccaatttcaaaatcaatctgcaatacca
gaattagttgaaaaagtcaaagaattatcacttaataaaaacaaaataataataaaaaac
gaatttgacgtaaggtcatactttttaattcgtcaacagttagaagatttaggaaaacaa
tatcattcttttataacagacccaaaaaatttagtacctttttgtaatccagggagactt
gttaagattaagaagaatgatgtagattttggctggggtgttattgtcaatttcaaatct
gtaatgaagagtaaacatgaaggtggtggtattggcgaagcaatattaaatgtgctatta
aatttagaacgatctgttgaaaacacagaagaagagccaataccttgtgctcctgggaag
ttaggagaacctgaaattattaatatcagacataacatggttgaagatttaagttcttta
cgattaaacaaaatgcccaatgatttaaaatctcgtgattctcgaatgttactgtataat
aatgtaaaagaagttttacaaagatgttcgactgatattcctctgttagatccaattaat
gacatgaatatcaaagatgcagagtttgataaagtaattgatcaaattgaaaaatttgaa
agtagattatttgctcatccattacacgaaaaagaagatgtcgatgaactttataatcaa
tatttggaaaaagacaaagtggatcgagaacttttaaaatctaaaaccgaattaaagaaa
gccagatcactcatgcaaatggatgatctcaaatgcagaaaacgcatattgaggcgaatg
ggctattgtactgctggagaagttatagaaactaaaggaagaatagcatgtgaattgagc
agtgctgatgaattattaatgactgaattaatattcaatggtgtgttcaatgatttatca
gtacctcagacagtggcattacttagttgttttgtatgtgatgaaaaaagtaatgaatta
cccgcgaaaactgctgaattagcagggcctttaagaaaaatgcaggaacttgcaagaaaa
atagctaaagtttgtaaagatgctaaattagatattgaggaagattcctatgttgaaggc
tttaaaccatttttaatggatgtttgttacgagtggtgtcgaggtgctacattctatcaa
atatgccaaatgactgatatatttgaaggaagtataatacgagcaatgagacgtttagaa
gaaatattgagacaattaatccaagcatccaaaagtattggcaacactgaccttgaaaat
aaattcagtgaatctgttaagattgttaaaagagatattgtatttgcagccagtctttat
ttataa
DBGET
integrated database retrieval system
