Acyrthosiphon pisum (pea aphid): 100160197
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Entry
100160197 CDS
T01076
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
api
Acyrthosiphon pisum (pea aphid)
Pathway
api03013
Nucleocytoplasmic transport
api03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
api00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100160197
03015 mRNA surveillance pathway
100160197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
api03019
]
100160197
Enzymes [BR:
api01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100160197
5.6.2.5 RNA 5'-3' helicase
100160197
Messenger RNA biogenesis [BR:
api03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100160197
mRNA cycle factors
Common to processing body (P body) and stress granule
100160197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
AAA_10
AAA_32
ATPase
AAA_16
Motif
Other DBs
NCBI-GeneID:
100160197
NCBI-ProteinID:
XP_029341295
APHIDBASE:
ACYPI001512
UniProt:
A0A8R2NJQ9
LinkDB
All DBs
Position
X:115278819..115285760
Genome browser
AA seq
1118 aa
AA seq
DB search
MSIDILYEPSSQDLVFLETDEVDIIGEDTQSDDADTICADTQGSEFEFTDFTLPSQSIPP
MSQLELPSLAHRMQFLSDEIDKNDTHVTTVTKTIGELRFKDEEEDSFFTQELPYYACKYC
GIHDPGCVVMCNICKKWFCNGRGNTSGSHIINHLVRANHKEVTFHKDGPLGETVLECYSC
GVKNVFVLGFVTAKGDSVLVLLCRQPCSTQNTLKDLNWDQEQWKPLIADRCFLTWLVKVP
NTTDQFRSRNISATQITKLEELWRHNNEATINDLDKPGIDEEQQIVLLRYKDGFHYKNVF
GSLVKLVADNDKHLKESRTQENITVRWDVGLNKKFVAFFHLVKTDGDMRLMYDDELRLRL
TGENPWEGIGHVIKIPDNYGEGIGLEMKSNKGVPTEITSNYKVDYIWKSTSFDRMQCSLN
RFATDESSVSTYIYHKLLGHEFDDLIFRSHMPKHFSAPNLPDLNRSQVKAVKHAVQRPLS
LIQGPPGTGKTVTSATIVYQLVTINGGPVLVCAPSNIAVDQLTEKIHRTGLKVVRLCSKS
RESIDSPVSFLALHNQVQKLPSNGVLQKLQQLKNETGELSMDDEKRYSVLKKVAEQELLE
AADVICTTCVGAGDPRLMQFKFHSILIDESVQATEPECMVPVVHGVQQLILVGDHCQLGP
VVTCKKAANAGLTQSLFERLVVLGIRPFRLEVQYRMHPELSRFSSNFFYEGSLQNGVCAD
DRKLRKIEFPWPVADEPMLFYATLGHEEIAGSGTSYLNRTEAANVEHIATRFLRCGVRPD
QIGIITPYEGQRAYLVQYMQYQAPLPAKLYQKIEIASVDAFQGREKDFIIMSCVRSNENQ
GIGFLNDPRRLNVALTRAKYGLLIVGNPKVLSKKQLWNHLLNYYKAKNVLVEGPLNNLKP
SPIQLPKPKQLKSTINPGSYFMTTQMYNAHEALIPGCAYYHSNQGNVPISHGTPQYFPRP
DPAVKMGLDFNTCNGNPSTFIMPRFRSELQIGGIPIGTMMNINPMAPTRFFNQQSVKNRQ
NIHTNHLPMTSGRLNTKANQKNQKSNEIRALRLTSTSQDVSQPMSQSMSQPGFSLSQPGL
SEPDLSQDSFIMNEFHSQMDGLLSQDSTYEGGRTVTLF
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgacatattatatgaaccgagttcacaggacttggtattcttggaaaccgat
gaggttgacataattggcgaagatacccagagcgatgacgctgacaccatttgcgcagat
acccagggcagcgagtttgagtttaccgacttcacattgccatcccaaagcataccgcca
atgtctcaattggaattgccatcattggcacatagaatgcaatttctgagcgatgagatt
gataaaaatgacactcatgtcactactgtcactaagacaattggtgaattgcggttcaag
gatgaagaagaagattcattttttacccaggaattgccatattatgcatgcaaatattgt
ggcattcatgatcctggatgtgtagtcatgtgtaatatttgcaaaaaatggttttgtaat
ggtcgtgggaatacttctggatcacatattattaatcatttggttcgagccaatcataag
gaggttacattccataaagatggtccattgggtgaaactgtgttggagtgctattcgtgt
ggtgtaaaaaatgtgtttgtgcttggattcgtaaccgccaaaggagactcagtgctcgta
ttgctatgcagacaaccatgttctacacaaaacactttaaaagatctgaactgggatcaa
gaacaatggaaaccattgattgctgatcgctgttttttgacttggcttgttaaagtacca
aatacaactgatcaatttcgctctagaaatatcagtgctactcaaatcacaaagcttgaa
gaactatggagacataataacgaggcaacaattaatgatcttgacaaaccaggtatagac
gaagaacaacaaattgttttactcagatacaaagatggatttcattataaaaacgtattt
ggatcattggtgaaattagtagcagataatgataaacatctaaaagaatctcggactcaa
gaaaatattactgtacgctgggatgttggattaaataaaaaatttgtcgcctttttccat
ctagtcaagactgatggtgatatgcgtttgatgtatgatgacgaactgcgattgagattg
acaggggaaaacccttgggagggaattggccatgttattaaaatacctgacaattatgga
gaaggcattggcttagaaatgaaaagtaacaaaggtgtaccaactgaaataacatcaaat
tataaggtagattatatatggaaatctacatcttttgacagaatgcagtgttcattgaat
agatttgccacagatgaatcatcagtgtcgacatatatataccacaaactgctgggacac
gagtttgatgatctaatttttcggtcacatatgccaaaacatttctcggcaccaaactta
ccagatttaaatagatcacaagtaaaagcagttaagcatgctgtacaacggcctttgtct
ttaatccaaggacccccaggaactggtaagacagtgacttctgctacgattgtttaccaa
ttagtgacaattaatggtggaccagtattggtatgtgctccttcaaatatcgcagtggat
caactaacagaaaaaattcatagaactggcttaaaagttgtccgattgtgttctaaatct
cgtgaatctattgattctccagtttcgtttttagctcttcataaccaggtccaaaagttg
ccaagcaatggtgtgcttcaaaagctacaacagttgaaaaatgagactggtgaattgtca
atggacgatgaaaagaggtatagtgttctgaaaaaagtagctgaacaagaattacttgaa
gccgcagatgtaatttgcactacatgtgttggagccggtgatccgcgtctaatgcaattt
aaatttcattctatcttaatagatgaaagcgtgcaagctacagaacctgaatgtatggtg
ccagttgtgcatggagtacaacaattaattctggttggagaccattgccaacttggacct
gtggtaacatgtaaaaaagctgccaatgctgggttgactcaatctctttttgagcgtctt
gtagttttgggtattcgtccattcaggttggaagttcagtatagaatgcatccagaacta
tcacgattttcttcaaatttcttttatgaaggttcattgcaaaatggagtttgtgctgat
gataggaagttaagaaaaattgagtttccatggccagtagcagatgaacctatgttattt
tatgcgacactaggccatgaagaaatagcaggttcaggaacgtcgtatttaaatagaaca
gaagctgctaatgtggaacatattgccactaggtttttgagatgtggtgtgagacctgat
caaataggaattatcacgccatatgaaggacaacgtgcatacttggtacaatacatgcaa
tatcaagcccctcttccagctaaattatatcaaaaaatcgaaatagctagtgttgatgca
tttcagggtcgggaaaaagattttattattatgtcatgtgtgcgttccaacgaaaaccag
ggaattggttttctcaacgatcccaggcgattaaacgttgcactaactagagctaaatat
ggcttattaattgttgggaatccaaaagtcttatcaaaaaaacaattatggaatcatctg
ttgaactactataaagcaaaaaatgtattagtagaaggaccattgaataatttgaaacca
tctcctattcaactgccaaaacctaaacagttgaagagtacaattaatccaggatcatat
ttcatgacaactcaaatgtataatgctcatgaagctttgatccctggttgtgcttattat
catagcaatcaagggaatgtaccaattagtcatggtacacctcaatattttccaagacca
gatcctgctgttaaaatgggtttggattttaatacttgtaatggcaatccatcaacgttt
atcatgccacgtttcagatctgaactacaaattggcgggatacctattggcacgatgatg
aatataaatccaatggctcccaccagattctttaatcaacaatctgtaaaaaatcgccag
aatatacatactaaccatttgccaatgactagtggtcgtctgaacactaaagcaaatcag
aagaatcaaaaatcaaatgaaatccgtgctttgcgtctcacctcaacttctcaagatgtt
agtcagcccatgtcacagagtatgtctcagcctgggttcagtctttcgcaacctggacta
tctgagcctgatttatcccaggatagtttcataatgaatgagtttcactcgcaaatggat
ggattactctcacaagattcaacatatgaaggtggccgtactgtcacactgttttaa
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