Acyrthosiphon pisum (pea aphid): 100163624
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Entry
100163624 CDS
T01076
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
api
Acyrthosiphon pisum (pea aphid)
Pathway
api03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
api00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100163624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
api03019
]
100163624
Enzymes [BR:
api01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100163624
Messenger RNA biogenesis [BR:
api03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100163624
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100163624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_NXF1-5
LRR_R13L1-DRL21
DUF2541
Motif
Other DBs
NCBI-GeneID:
100163624
NCBI-ProteinID:
XP_001947380
APHIDBASE:
ACYPI004697
UniProt:
A0A8R1W3U5
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Position
A3:complement(41723607..41785260)
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AA seq
572 aa
AA seq
DB search
MNDSTEECSPFKDRKKKTHMSLNDKKRLAREKAEQYNSNGRPSRQYHMLTAEEVKQGKET
RWEQLEIIGCVKNISPSLWNLTTLTGLYLNDNQLTRLPPDISMLVNLVYLDLSGNKLRSL
PAELGELVYLRELHLGYNMLRSLPHELGRLFQLQVLGLAGNPLCQEVMKLYSEPNGTHRL
LMYLLDSLQVRVPVPPGRPWIPLSRPNKNIPSCPVTVMCYNVLCEKYATTQMYGYCPSWA
LSWDYRKKVILGEIRHYTADIITLQEVETDQFYNFFLPELKKDGYDGVFSPKSRAKTMSE
NDRKRVDGCAIFFRAIKFTLIKEHLIEFNQLAMANSSGSDDMLNRVMPRDNIGLAALLKT
NETAWENSLPSEVQQPILVCTAHIHWDPEFCDVKLIQIMMLSNELNTILEDANRNYRNVN
HHQPPIQLLLCGDFNSLPDSGVIEFLSAGKVSSDHQDFKDLQYKTLLHKISTCDRPNEFM
HSFKLSSAYENIMPFTNYTFNFKGIIDYIFYTRQTMTPLGLLGPLAPEWFKDNKVLGCPH
PHIPSDHFPLLVEFELSPNAHQSNSNGLIGRR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgaacgattcaaccgaagaatgttctccatttaaagatagaaagaaaaaaactcatatg
tcgttaaatgataaaaagcgtttagctcgagaaaaagctgaacagtacaatagcaatggc
agaccttcacgccaatatcatatgttaactgctgaagaggtaaaacaggggaaagaaact
cgttgggaacaattggaaatcattggttgtgtaaaaaatataagtccttctttatggaat
ttgacgacattaacaggactttacctcaatgacaatcaattaactcgtttgccgccagat
atatcaatgcttgttaatttagtatatctggatttgtctggtaataaattacgtagttta
cctgctgaacttggtgaattagtgtatctcagggaattacacttgggttataatatgtta
agatcactgccacatgaattggggcgtttattccaactgcaagtattaggtttagctggt
aatcctctatgtcaagaagtaatgaagttgtatagtgaaccaaatggcacacacagattg
cttatgtatctcttagatagcttacaagtgagagtacctgtgccgccgggaagaccatgg
atacctctatctagaccgaacaagaatattccttcctgtccagttacagtgatgtgttat
aacgttttatgtgagaaatatgctactactcagatgtacggatattgtccatcttgggcc
ctctcctgggattataggaagaaagtaattttaggcgaaatccggcattatactgccgat
attatcactttacaggaggtcgaaacggatcaattttacaatttctttttgccggagctt
aagaaggacggctacgatggcgtattctcccccaagtcaagagctaagactatgtccgaa
aacgaccgtaaacgagtagatggatgtgcaatattcttccgagcgatcaaatttacgtta
atcaaagaacatctgatagaattcaatcaactggcaatggccaattcgagtggttcggac
gacatgctcaaccgagttatgcccagagacaacatcggtctggctgccttattgaaaacc
aacgaaaccgcatgggaaaactctctgccatctgaagtccaacagcctatacttgtttgt
accgcacacatacattgggatccagaattctgtgatgtcaagctcatacaaatcatgatg
ttatcaaatgaattgaacactatactagaagatgctaaccgcaattatcgtaatgtgaat
catcatcaaccgccaatacagctgttactgtgtggggatttcaattcattgcctgactct
ggagtgatagaatttttgtccgctggtaaagtatcatcggatcatcaagactttaaagat
ctgcagtacaagacacttctacataaaatttctacgtgcgatagacccaacgagtttatg
cattcctttaagttatcttctgcttacgaaaacataatgccatttacaaattatacattc
aattttaaaggcatcattgattatattttctacactagacagacaatgacgccacttggt
ttgcttggcccattagctcctgaatggttcaaagacaataaagtactcggttgtccacat
cctcatataccatctgatcattttccgttgttagtagaattcgagttatcgccaaatgca
caccaaagcaattcaaatggattgattggccgaaggtag
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