Acyrthosiphon pisum (pea aphid): 100165988
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Entry
100165988 CDS
T01076
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
api
Acyrthosiphon pisum (pea aphid)
Pathway
api03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
api00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100165988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
api03019
]
100165988
03041 Spliceosome [BR:
api03041
]
100165988
Messenger RNA biogenesis [BR:
api03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100165988
Spliceosome [BR:
api03041
]
Complex B
Other components
Prp19-related factors
100165988
Complex C
100165988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
TPR_15
TPR_12
TPR_2
Mad3_BUB1_I
NRDE-2
ARM_TT21
RPN7
TPR_10
DHR-2_Lobe_A
MMR_HSR1_Xtn
PPR
Motif
Other DBs
NCBI-GeneID:
100165988
NCBI-ProteinID:
XP_001951071
APHIDBASE:
ACYPI006897
UniProt:
A0A8R2A5W6
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Position
A3:complement(22667398..22670436)
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AA seq
853 aa
AA seq
DB search
MRMELDVVREHVGNNMSDAAIFQTYRLNKRDVEFEQDILRNPNSVKCWMRYIDNYKLGPY
KKVCVLYERALKQLPGSYKLWHCYLKIRRKYLKTTDNPDYEEVNNVYERALVYMNKMPRI
WIEFCTFMLKQPKLTVARRLFDRALRALPITQHSRIWPLYLKFIKESHDPEVAVKIYRRY
LKLFPEDSEDYIEYLTTSGRLDEAAVRLSEIVNNDSFVSKHGKSKHQLWNELCNLISKNP
LEIKSLNVDAIIRSGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDF
TQVYDAYAQFEELSLQKRMEVVHANQNSTEKDDCEIDLRMARLENLIERRLLLLNSVLLR
QNPHNVKEWLKRVQLYEGNDVQVINTFTEAVETVDPQKAVGRLHTLWVEFAKFYEKAKQV
EEARLVFKKAVLVSYIKVEHLASVWCEWVEMELRHDNFNEAMRLMRQATSIPSRKVAYHD
DTETVQIRLHKSLKLWSLYLDMEESFGTVKSTMACYDRVIDLRIATPQTIINYGLFLEES
NYFEEMFKAYEKGVALFKWPNVFDIWNTYLTKFLDRYGGTKLERARDLFEECLEGCPPQF
AKCIYLLYAKLEEKHGLGRRAMAVYERATEAVLPEEKFEMFNIYIKKAAEISGIPKTREI
YMKALEVLTNNNARTMYLRFAELETKLGEIDRARAIYSHCSQICDPRVTEEFWQTWTSFE
VAHGNEDTLREMLRIKRSVQAMYNIQVNMMSAQMMSVISVEPEKSGMKLLEEKALENKEK
PLEPIKFVLGSEQDRLPNEKVTNPDEIQFSDDEDEEDGDKENEENDDEDMPTKKDVPAEL
FGNLGAFTEKNTE
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgagaatggaactcgacgtggtacgagaacatgtgggcaataacatgtcggatgccgcg
atattccaaacgtacaggttgaataagagagatgtagaatttgaacaagacatactgaga
aatccaaattcggtcaagtgttggatgcggtacatagacaattacaaactggggccgtac
aaaaaagtatgtgtactgtacgaacgcgccttgaaacaactgccgggaagctacaaactg
tggcactgttacttgaaaatacgtcgtaagtacttaaaaacaacagacaatccagactac
gaagaagtaaacaatgtttacgagcgagcgttggtgtacatgaacaagatgcctcgcata
tggattgagttttgcacgttcatgttgaaacagcctaagctcacagtcgctcgccgtctg
tttgatagggcccttagagctttaccgatcactcaacattcacgaatatggccattgtat
ttgaaattcataaaagaaagtcatgatccagaagttgctgttaaaatatataggagatat
ttaaaattatttccagaagattcggaagattatattgaatacttgaccacatctgggcga
ctcgatgaagctgctgttcgtttgtcagaaattgtgaacaatgacagttttgtatccaaa
catggtaaatctaagcatcaactctggaatgaactttgcaatttaatatcgaaaaatcct
ttagaaattaaatcattaaatgttgatgcaattatacgtagtggtttaaggcgttacact
gaccagcttggtcatttgtggaactcattagctgattattacatacgtagcggattattt
gaaagagcaagagatatatatgaagaggctattcaaactgttacaacggttcgtgatttt
acacaagtgtatgatgcttatgcacaatttgaagagttaagtttacaaaaacgaatggaa
gtagttcatgctaatcaaaatagtactgagaaagacgattgtgaaattgatttacgcatg
gcaagattggaaaacctgattgaaagacgattattacttttaaactctgtacttttaaga
caaaacccccacaacgttaaagaatggttgaaacgtgtacagctctatgaaggaaatgac
gttcaggtaataaatacttttaccgaagctgtagagacagttgatcctcaaaaagctgta
ggtagattacatacactttgggtggagtttgctaaattttatgaaaaagccaaacaagtc
gaagaagcacgcttagtatttaaaaaagctgttttagtgtcatatattaaagttgagcat
ttagctagcgtttggtgtgagtgggtggaaatggaattgagacatgataactttaatgaa
gcaatgagactaatgcgacaagcaacttccataccttctcggaaagttgcctatcacgat
gatacagaaaccgttcaaatacgattacataaatcattaaaattatggtctttgtatttg
gatatggaagagagttttggaacagtcaaatcaacaatggcttgttatgatcgagttata
gatttaagaattgcaactccacaaactattatcaattatggattatttttagaagaaagc
aactattttgaagaaatgtttaaagcttatgaaaaaggtgtagcgttattcaagtggcca
aatgtttttgatatatggaatacatacttgacaaaatttttggaccgttacggtggcaca
aaactagaacgtgcacgtgatctttttgaagagtgtctagaaggttgcccaccacaattt
gccaagtgtatttatttattgtatgcaaagcttgaagaaaaacatggtttaggcagacga
gcgatggccgtatacgaaagagccaccgaagctgttctacccgaagagaagtttgaaatg
ttcaacatttacattaaaaaagcagcagaaatatctggtataccaaagactagagaaatc
tatatgaaagccttggaagttttaacaaataataatgctcgtacaatgtacctaagattt
gctgaacttgaaacaaaattaggtgaaattgatcgggctcgagcaatatactctcattgt
agtcaaatttgtgaccctagagtaactgaagaattttggcaaacgtggacctcatttgaa
gtagctcatggtaatgaagatactctccgagaaatgctaagaattaaacgaagtgttcaa
gcaatgtataatatccaagttaacatgatgtcagcacaaatgatgtctgttatttcggtt
gaaccagaaaagagtggaatgaaattgttagaagaaaaagcattagaaaataaagaaaaa
ccattggaacctatcaaatttgttttgggtagtgagcaagatcgtttaccaaatgaaaaa
gtaacaaatccagatgaaattcaattcagtgatgatgaagatgaagaagatggtgacaaa
gaaaatgaagaaaacgatgacgaagatatgcctactaaaaaagatgtgcctgctgaatta
tttggtaacttaggagcatttaccgaaaaaaatacagaatag
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