Apibacter sp. B2966: G8C43_01345
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Entry
G8C43_01345 CDS
T06471
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
apib
Apibacter sp. B2966
Pathway
apib02020
Two-component system
apib02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
apib00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
G8C43_01345 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G8C43_01345 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apib03021
]
G8C43_01345 (rpoN)
Transcription machinery [BR:
apib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G8C43_01345 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
AbiTii
Motif
Other DBs
NCBI-ProteinID:
QII71471
LinkDB
All DBs
Position
complement(320316..321785)
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AA seq
489 aa
AA seq
DB search
MLKQDLRLKQLLKLSPQQIQLMKLVQLPTLAFEEVVKQEIEENPALEDNSNEDYYDSADS
FDSEKEYDDSADNEIIEAPDINIDDYLSDDEVPSYRVQSNNYSDDDDDKELPYAQYESFQ
EHICSQLHTFRLTENEEEIADFIVGNLDDDGYLRRDLSSIVDDLAFTQGIYTDVPTIEKL
LTNYIQRLDPTGIGARDLRECLLLQLRAKNPSESTELAYKIINEMFDAFTKKHYSKIQQK
FSISEEKLKCAVNEIERLNPKPGKAFTNNSKNTEQIIPDFTIRIVNGDLELTLNGRNAPE
LKISREYSEMLDTYKNTEHKSREQKDAVMFVKQKLDSAKWFIDAVKQRQQTLYVTMKSIM
DYQKEYFLTGDEEQIKPMILKDIAEITGLDISTISRVANSKYVNTPYGTLLIKDLFSESL
TNSEGDEVSTREIKTILQEVIENEDTKKPLTDDNLMKILNDKGYNIARRTIAKYRDQLNI
PVARLRKKI
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaacaggatttaagactaaaacaacttttaaaactatctcctcagcaaattcag
ctaatgaaactagttcagcttcccacccttgcatttgaggaagtagtaaaacaagaaatc
gaagaaaatcctgccttggaagataattctaatgaagattattatgattctgctgattcc
tttgattccgaaaaagaatatgatgattccgcagacaatgagattattgaagctccggat
ataaatatcgatgattatctaagtgatgatgaagtacccagctatcgggtacaatccaat
aattacagcgatgacgatgatgataaagagttaccctatgctcaatatgaatcatttcaa
gaacatatatgctctcaattacacacatttagattaacggaaaatgaagaagaaatagcc
gattttatcgttggaaatctagacgatgatggctatttacgaagagatttatcatccatc
gtggatgatttggcttttacccaaggaatttatactgatgttccgactattgaaaaactg
ttaactaattatattcaaagattagatcctaccggtattggagccagagacctcagagaa
tgtctgttattgcaactcagagcaaaaaatccttcagaatccacggaactggcttacaag
attattaatgaaatgtttgatgcttttacaaaaaagcattacagtaaaatacagcaaaaa
ttttccatttctgaagaaaagcttaaatgcgcggtgaatgaaattgaacgcttgaaccct
aaaccgggaaaggcttttactaataattcaaaaaatacggaacaaattattcctgatttt
acaatcagaattgtaaacggagatttggaattaacgctcaatggtaggaatgctcctgaa
ttaaaaatttccagagaatattctgaaatgttggatacatataaaaataccgaacacaaa
tcaagagagcaaaaagatgcggtaatgtttgttaaacaaaagttagattctgctaaatgg
tttatcgatgcagttaaacaacgtcaacaaaccttgtatgttaccatgaaatcaattatg
gattatcagaaggaatattttttgacgggagatgaagagcaaattaaaccaatgattttg
aaagatattgccgaaatcaccggtttagatatatccactatctcaagggttgccaacagt
aaatatgtgaatactccgtatggaactttgcttataaaagatttattttctgaaagtctt
accaattctgagggcgatgaagtttccacacgggaaattaaaaccatcttacaagaagtc
attgaaaatgaagacactaaaaaacctcttaccgatgataacttgatgaaaatacttaat
gataaaggatataatatagcaagaagaaccattgcaaaatatagagatcaactcaatatt
cctgtagcaagattaagaaaaaaaatataa
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