Apibacter sp. B2966: G8C43_03890
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Entry
G8C43_03890 CDS
T06471
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
apib
Apibacter sp. B2966
Pathway
apib03030
DNA replication
apib03430
Mismatch repair
apib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
apib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G8C43_03890 (dnaE)
03430 Mismatch repair
G8C43_03890 (dnaE)
03440 Homologous recombination
G8C43_03890 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apib03032
]
G8C43_03890 (dnaE)
03400 DNA repair and recombination proteins [BR:
apib03400
]
G8C43_03890 (dnaE)
Enzymes [BR:
apib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
G8C43_03890 (dnaE)
DNA replication proteins [BR:
apib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
G8C43_03890 (dnaE)
DNA repair and recombination proteins [BR:
apib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
G8C43_03890 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
T2SSK
Motif
Other DBs
NCBI-ProteinID:
QII71954
LinkDB
All DBs
Position
924955..929325
Genome browser
AA seq
1456 aa
AA seq
DB search
MKFLVFDTETTGLPANANAPVSDSDNWPRMVQIAWQLHDENGDLIENYDYIIKPEGYDIP
FNAQKIHGISTEKALAEGHDLKTVLDQFNAVLADNPILVGQNIAFDIPIVGAEFYRKSIE
NHIADLPLIDTAREGTNFCALPGGMGGGFKFPKLSELYEKLFGHGFDEAHNAAADVNATA
QAFWELVRRNQISANKLNFTEEELSAFVETHPEPFQPFDIVIREQVKDFNKQLKGKSEST
KKSVDEINYSSFFHFHNHSVYSILTSTSKHSDLIKKTLEYNMPALGVTDTGNLMGAFAFL
NEIKKANGSIKDHNAKILEGDGSEPLKNEILPIIGCELYISETYLQNKFTKDNPDRRYTQ
ILLAKNHEGFKNLSKLSTLGYKLGLYAGYPRIGKELIEQYKENLIATTGSLSSEIPSLIL
NVGEKQAEEAFIYWHGLFGDDFYVELLRHHLDEEEHLNKVLIKFAKKYGVKVLAQNDTFY
ISKKEAETQDILLCIKDGEKQSTPKGRGFGRRYGLPNDEYNFKSQTEMAQLFADIPEAIE
NFEDFIKKFEPYQLTRDVLLPKFDIPDEFKDPQDEVDGGKRGENAYLAYLTWEGAKKRYG
DQLSEDTKDRLQFELETIAKTGYPGYFLIVQDFTSQARKMGVSVGPGRGSAAGSAVAYCI
GITNIDPIKYDLLFERFLNPDRVSLPDIDIDFDDRGREKIIQWVVDKYGENQVAQIITYG
TLAGRSAIRDAGRVLELPLSDTDRLSKNLPSTLNLTKLKNKTESELIKDFGKEESVPVLQ
LKQKFNEYDLEGRVIQNAYQLEGSLRNTGVHACGVIITPEDITNLIPVAVAKDSSLLVSQ
FDNSVVESAGLLKMDFLGLRTLTIIADTIEIIRKRTGEVLNPDDFPLDDDKTYEIFKNGN
TVGIFQYESPGMQKHLKALQPDKFEDLIAMNALYRPGPLQYIPNFINRKHGKEEISYDLE
DMEEYLADTYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQIQVLNKMEARFLEGA
IERGHPEDKLKKIWEDWKAFAQYAFNKSHSTCYAFIAFQTAYLKAHFPAEFMAALLSNNL
NNLSTLSFFMEECKNMGLEVLGPDVNESDYEFTVNEKGAIRFGMGAIKGIGENAVEAVVS
ERQTKGKYKNLFEFFERTDLKNINKKVLENLVLAGAFDGLANNNRAQFFKEENGTSTIEK
LVRYGIAYQDNKNSAQNSLFGDLGDEGFDVMKPVIPETEEWSTMYKLGREKEVVGIYISA
HPMDNYKYEIALIKPVDISEINENKENYINKEVYIAGMISRFEHKEINDGRTRIAYFDLE
DKTGTISLKLKKNYLDLQKYLIPNLFVLVKITVGMIKDNGFVYINVLNIEELSDVIGKHA
KKLTIKINLENLDENTITTLNKVCDENAGSKDIHFEIIDKKNNVYLESQSMNRRVNINKQ
ILDVLRNDLYLDFRLN
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctagtttttgatactgaaaccacaggtcttcctgccaatgcaaatgcacct
gtttccgattcagacaattggcctagaatggttcaaattgcctggcagttacatgatgaa
aatggtgatttaattgaaaactatgactatataattaaacccgaaggatacgacatccct
ttcaatgctcaaaaaattcacggtataagtaccgaaaaagcattagcggaaggtcatgat
cttaaaaccgtattggatcaatttaatgcggtactggcagataatccgattttagtcgga
caaaatatagcattcgacatcccgattgttggagctgaattttatcgaaaatcaatagaa
aaccatattgcggatcttccgttaatagatacagcccgtgagggaactaatttttgtgct
ttgcccggaggtatgggaggtggatttaaatttcctaaactttccgaattatatgaaaaa
ttatttgggcatggttttgatgaggcacacaatgctgcggcagacgttaatgctactgct
caggcattttgggagttggttagacgaaaccaaataagtgcaaataagctgaattttaca
gaagaagaattaagtgcttttgttgaaactcatcctgaaccttttcaaccttttgatatt
gttattcgtgaacaggtcaaagattttaataaacaactaaaagggaaatcagaaagtact
aaaaaatctgtagatgaaataaattattcatcttttttccactttcacaatcattcggtt
tattcaatacttacttctaccagtaaacattctgatttaataaaaaaaaccttagaatat
aacatgcccgctttaggtgtaacggatacgggcaacttgatgggtgcatttgcttttctc
aatgaaataaaaaaagctaatggatctattaaagatcataatgctaaaattttagaaggc
gatggttctgaacctttaaaaaatgagattttaccaattatcggttgtgaactgtatata
tctgaaacttatttacaaaataaatttacaaaagataatccggatcgtagatatactcag
atattacttgctaaaaatcatgaaggatttaaaaatctttctaaattatcaactttagga
tataaactaggtttgtatgcaggctatcccagaattggaaaagaacttattgaacaatat
aaagaaaatttaattgcaactaccggaagtttatcttcagaaattcccagtctaatttta
aatgtgggagaaaagcaggcagaagaggcctttatctattggcatggattatttggtgat
gatttttatgtagagttattaagacaccatttagatgaagaggaacacctcaacaaagtt
ttaataaaatttgccaaaaaatacggagtcaaggttttagctcaaaacgatacattttat
attagtaaaaaagaagcagaaacccaggatatccttttatgtataaaagacggagaaaaa
caatctacccctaagggcagaggttttggaagaagatacggtcttcctaatgatgaatat
aattttaaatctcaaacagaaatggctcaattgtttgcagatataccggaagcaattgaa
aattttgaagattttatcaaaaaatttgaaccttatcaattaacccgagatgttttactt
cctaaatttgatatacctgatgaatttaaagaccctcaagatgaagtggacggaggtaag
cgaggagaaaatgcctacttagcatatctaacttgggaaggagctaaaaaaagatatggt
gaccaattatccgaagatactaaagatcgtttacaatttgagttggaaaccatagccaaa
acgggatatcccggctattttctcattgtacaggatttcacctcacaagcgcgtaaaatg
ggtgtatctgttggtccgggtcgaggttctgcagccggatcagccgttgcttattgcata
gggattactaatatagatcctattaaatatgatttactttttgagcgtttcttaaatccg
gatcgggtatccttacccgatatagacatcgattttgacgatagaggacgtgaaaaaatc
attcaatgggtggtagataaatacggagaaaatcaggttgctcaaataattacttacggt
acgttagccggacgttccgcgataagggatgcaggaagagtgcttgaattgcccttaagc
gatacagaccgcttatcaaaaaacctaccctctaccttaaatttaaccaagctaaaaaat
aaaacagaaagtgagttaattaaagatttcggtaaagaggagtctgttcctgtgcttcaa
ctaaaacaaaaatttaatgaatatgacctggaagggcgggtaatacaaaatgcttaccaa
ctggaaggtagcttacggaacacgggagttcatgcgtgtggagtaattattactccggaa
gatattactaatttaataccggttgccgttgctaaagattcctctttgttggtatcccaa
tttgataactccgtggtagaaagtgccggattgttaaaaatggattttctaggtttacgt
accttgacgattattgccgataccattgaaattattagaaaaaggaccggagaagtttta
aatcccgatgattttcctttggatgatgataaaacctatgagatattcaaaaatggaaat
acagtagggatattccaatacgagtcccccggaatgcaaaagcacctcaaagctttgcaa
cccgataagtttgaggacttgattgccatgaatgccttgtatcgtcccggacctttacaa
tatattcccaactttatcaatcgtaaacatggaaaggaagaaatatcttacgatttagag
gatatggaagagtatcttgcggatacttacggtattactgtttatcaagaacaagtaatg
cttctttctcaaaaattagccggatttagtaaaggtgatgcggatgtgctaagaaaagct
atgggtaagaagcaaattcaagtcttaaataaaatggaagctcgttttcttgagggagct
atcgaaagaggtcatccagaagataaattaaaaaaaatatgggaagactggaaagctttt
gctcaatatgcttttaacaaatctcactccacttgttatgcttttattgcctttcaaacc
gcttatttaaaagctcattttcctgcagaatttatggccgcattgctcagcaataatctt
aacaatctttccactttgagtttctttatggaagaatgtaaaaatatgggattggaagtg
ctcggacctgatgttaatgaaagtgattatgaattcactgtaaatgaaaaaggtgctatc
cgttttggaatgggagctattaagggaatcggtgaaaatgctgttgaagctgtagtaagt
gaaagacaaactaagggaaaatataaaaatctgtttgaattttttgaaaggacagattta
aaaaatataaataaaaaagttctggaaaatttagtattggcaggagcttttgatggatta
gccaataataatcgtgctcaattttttaaagaagaaaatggtaccagcactattgaaaag
ctggtaagatacgggattgcctatcaggataataagaattctgctcaaaattctttattt
ggagacttgggggatgaaggatttgatgttatgaaaccggtaattcctgaaacggaagaa
tggagtaccatgtataaattgggcagagaaaaagaagtagtaggtatctatatatccgct
catccaatggataattacaaatacgaaattgctttgattaaacctgttgatatttccgaa
attaatgaaaataaagaaaattatattaataaggaagtgtatatcgccggtatgatctca
cgttttgagcacaaggaaataaacgacggcagaacaagaatcgcctattttgatttggaa
gataaaacaggtactatttctcttaagcttaaaaagaattatctggatttgcaaaaatat
cttattcctaatttatttgttttagtaaaaatcacggtaggaatgattaaagataacggc
tttgtatatataaacgtgctgaatattgaagaacttagcgatgtgatcggaaaacatgct
aaaaaattaaccattaagataaacttggaaaatttagatgaaaataccattactacttta
aataaagtatgtgatgaaaatgcaggttcaaaagatatacactttgaaattatcgataaa
aagaacaatgtatatttagaatcacaatcaatgaaccgaagagtaaatataaataaacaa
attttagatgtattaagaaacgatctgtatttagatttcaggttgaattaa
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integrated database retrieval system
