Apibacter sp. B2966: G8C43_05590
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Entry
G8C43_05590 CDS
T06471
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
apib
Apibacter sp. B2966
Pathway
apib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G8C43_05590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apib03019
]
G8C43_05590
03400 DNA repair and recombination proteins [BR:
apib03400
]
G8C43_05590
Enzymes [BR:
apib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G8C43_05590
Messenger RNA biogenesis [BR:
apib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G8C43_05590
DNA repair and recombination proteins [BR:
apib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
G8C43_05590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QII72266
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All DBs
Position
1296134..1298014
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AA seq
626 aa
AA seq
DB search
MDFSLPNKILESYWGYKEFRPLQKEIILTILESKDTIALLPTGAGKSICYQVPALLVQGT
CIVISPLLALIKDQVYSLKRKLIPAEYISSDQTADQQLSVFNKLRNNELKLLYVSPERLL
NKTFLEIIKDIEISFIAVDEAHCISEWGNDFRPSYQQIIKFREYIGIQIPCMALTATATE
KVLIEIIKKLDLHNVQVFKRSFNRENLSLQVLNAGDKFGEIERILHRYKGSGIIYCRTRN
ETKTLSETLKRKGFEVEFFHAGLSPSEKMQRQKNWTESTNQILISTNAFGMGIDKKDVRV
IIHLSPPYSLENYYQEVGRAGRDGLLSHTFLLWNEAELSDIYSSLIQTISSKSEYEKVIR
YLYSMFCIVPNELPDTIFDFDLKLFQQRTKINKSKIIPILEFLHNSSVLQWKYEPSDSLL
KINFPIERLDTNFYGNDSFLFEKIARKITGVFSYQIKFDEKKLADSLLIPLSVLHSKFIK
YNQSGDISYVDGNKQKIYFLEPRNDQKLLGSFWNEFQLIQQNKLVKYKELEFFIRNLKYC
RMKLILGYFGEKTNQICGKCDVCCKSKLDEQSYLKDILSYIKEQPRSREDIYAEFRNVSF
EKIHDCLQDLISENKIKALNFNTYSA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggacttttcattaccaaataaaattcttgaatcttactgggggtataaagaattcaga
cctcttcaaaaagagatcatacttactatattggaaagtaaagatactattgctctttta
cctacaggagcaggaaaatctatttgctatcaagtccccgctcttttggttcaaggcact
tgtatcgttatttctccattattggctcttataaaggatcaagtgtattcattaaaaagg
aaattaattccggccgagtatatttcttcggatcaaacagcggatcaacaactttccgta
tttaataaattgagaaataatgaattgaaattattatatgtatctccggaacgattgtta
aataaaacttttctagagatcattaaagatattgaaatttcgtttatcgcagttgatgaa
gcccattgtatttctgaatggggtaatgattttcgtccatcgtatcaacaaattataaag
ttcagagaatatatcgggattcaaattccttgcatggcacttactgcaaccgcaactgaa
aaggtcttaattgaaataataaaaaaactcgatttacataatgttcaggtatttaaaaga
tcatttaatagagaaaatctttctttacaagttttaaatgccggagacaaatttggggaa
attgaaagaattttacataggtataagggttcgggaattatttattgtagaactcgaaat
gaaactaaaactttgtctgaaactttaaaaagaaagggatttgaggttgaattttttcat
gcaggattatcccctagtgagaaaatgcaaagacaaaaaaattggacggaaagtaccaac
caaattctaatttcaacaaatgcttttggaatgggtatagataagaaagacgttcgtgtg
atcattcatctttctcctccttattcattagaaaattattatcaggaagttggtcgtgca
ggaagggacggacttttatcacatacatttttattgtggaatgaagcggaactttctgat
atatactcatcactcatacaaactatatcttcaaaatctgaatatgaaaaagttatccgt
tatttatattcaatgttttgtattgttcctaatgagttacccgatacaatttttgatttc
gacttgaaattatttcaacaacgtacaaaaattaataaaagtaagattatacctatttta
gaatttcttcataatagctcagttcttcaatggaaatatgagccttcagatagtctgctt
aaaattaactttcctatagaaagacttgacactaatttttacggcaatgattccttttta
tttgaaaaaattgccagaaaaataacaggtgttttttcttatcaaataaaatttgatgaa
aaaaaattagccgacagccttttaattcctctttccgtattacactccaaatttattaaa
tataaccaatcaggtgatatttcttacgttgatggtaataagcaaaaaatttacttttta
gaaccacgaaacgatcaaaaacttttaggaagcttttggaatgaatttcaacttatacaa
caaaataaattagttaaatataaagagttggaattttttatcagaaatttaaaatattgc
aggatgaaattaatccttggatattttggtgaaaaaaccaatcaaatatgcggtaagtgt
gatgtatgttgtaaatccaaattagatgaacaatcttatctgaaagatattttatcttat
ataaaagaacagcctagaagcagagaggatatttatgccgaatttaggaatgtttctttt
gaaaaaattcatgattgcttacaagatctaatttcagaaaataaaattaaagcattaaat
ttcaacacatattctgcttaa
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