Arcanobacterium pinnipediorum: NG665_03165
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Entry
NG665_03165 CDS
T08401
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
apii
Arcanobacterium pinnipediorum
Pathway
apii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NG665_03165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apii03019
]
NG665_03165
Messenger RNA biogenesis [BR:
apii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NG665_03165
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
USR80228
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Position
720376..721965
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AA seq
529 aa
AA seq
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MTVFELNGRILIVDCGVLFPEESQPGVDLILPDFDYIRDRMDDVDAIILTHGHEDHIGAV
PYLLRLRNDIPIIGSELTIALIEAKLAEHRIKSYVMVVQEGDVEQIGPFECEFIAVNHSI
PDALAVAIRSVAGTILHTGDFKMDQLPLDGRITDLRTFARLADEGIDLFMVDSTNAEVPG
FVRSEGEIGPVLESVFAQASGQIVVASFASHVHRVQQVLNAAAKFNRKVCFVGRSMVRNM
GIAEELGYLDVPDNVLIDLKNAHSVAPEQIVYMSTGSQGEPMAVLSRIASGSHKSISVGP
NDTVIFASSMIPGNENSVFRLINGLTKLGARVVHQGNAKVHVSGHSAQGELLYCYNIVEP
EFVMPVHGEPRHLVANGAIAVKTGVPAAHVLLTEDGSVVDMHDGKCAIVGEVPCGHVYVD
GSSVGEITEAELTDRLTLGEEGFIAVFAVVDGQKRAIIAGPHIQARGMAEDDSVFDNILP
KVTQALEEAIASEGATTYHMQQAMRRVLGRWAAKSLRRSPLIIPTVIEA
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtctttgaactcaacggtcgtatccttattgttgactgcggcgtgctcttccca
gaagaatcccagcctggtgtggatctgatccttccagactttgactacattcgagaccgg
atggacgacgtcgacgccattattctcacccacggtcacgaagatcatatcggcgctgtt
ccataccttttgcggttacgaaacgatattccgattattggttcggaactgactattgcg
ctcatcgaggccaaacttgccgaacatcgcatcaagtcgtatgtgatggttgtccaagag
ggcgacgtcgaacaaatcggtccatttgaatgcgaatttatcgccgtcaaccactccatc
ccagatgcgcttgcggtagcgattcgttcggtagctggaacgattttgcacacgggtgat
tttaagatggatcagttgcccctcgatggtcgcatcactgacctgcgcacgttcgctagg
ctcgctgatgaaggtatcgacctattcatggttgattccacgaacgctgaagtgcccgga
ttcgtgcggtccgaaggcgaaattgggccggtgctcgaaagcgttttcgcgcaagcatct
ggtcaaatcgtggtggcatcttttgcttcgcacgtccaccgcgtccaacaagtactcaac
gcagccgcgaaatttaaccgcaaggtgtgtttcgtggggcgctcgatggtgcgcaacatg
ggaattgctgaagaactcggctatctcgatgtccctgataacgtgctcattgatttgaag
aatgcgcactcggttgcaccagagcaaatcgtctacatgtctaccggttctcagggcgaa
ccgatggctgtgctctctcgtattgccagcggtagccacaagtcgatttcggtggggcca
aacgataccgtcattttcgcctcctcgatgattccaggcaacgaaaactctgttttccgg
ttgattaacgggttgacgaaactcggtgcgcgcgtcgtccatcaaggaaacgcgaaagtc
cacgtttcgggccactctgcgcaaggggagttgttgtattgctacaacatcgtcgaaccc
gagttcgtcatgccagtacacggcgaaccacgtcacctagtggccaatggagctatagcg
gtcaagaccggtgttccagcagcacacgttttactcaccgaggatggctcggttgttgat
atgcatgacggcaagtgtgccatcgttggcgaagtgccctgcggtcacgtctatgttgat
ggatcgtcggtcggtgaaatcaccgaagctgaactcactgatcgcttaacgctcggcgag
gaaggcttcatcgccgtctttgctgtagttgacgggcaaaagcgcgcgattatcgccggc
ccacatattcaagcgcgcggaatggcagaagacgattccgtctttgataatatcttgccc
aaggtcactcaagcccttgaagaagcaatcgcttccgaaggtgcaacaacctaccatatg
cagcaagctatgcgtcgggttttgggccgctgggcggccaagtcgcttcgccgttcgccg
ctgatcattccaacggtgatcgaagcctaa
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