Arcanobacterium pinnipediorum: NG665_06830
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Entry
NG665_06830 CDS
T08401
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
apii
Arcanobacterium pinnipediorum
Pathway
apii03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apii00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NG665_06830 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apii03021
]
NG665_06830 (rpoC)
03400 DNA repair and recombination proteins [BR:
apii03400
]
NG665_06830 (rpoC)
Enzymes [BR:
apii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NG665_06830 (rpoC)
Transcription machinery [BR:
apii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NG665_06830 (rpoC)
DNA repair and recombination proteins [BR:
apii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NG665_06830 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Mucin_bdg
CC149
Motif
Other DBs
NCBI-ProteinID:
USR79099
UniProt:
A0ABY5AFX4
LinkDB
All DBs
Position
complement(1522492..1526469)
Genome browser
AA seq
1325 aa
AA seq
DB search
MLDVNLFDQLHISLATSDDVRKWSHGTVTKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRPRYKGIVCERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTDVDAERRHNDMPALTAEYELERANLEKERDAAIEKRLKAEEDA
LAQAEKDGQDAAARAKIKRNAENETRRVRREYEEDLARLEDVWDKFTKLKVGDLEGDEEA
YREMALRWGDYFQAFRGAEAIQRRLKSFDLEAEHEALVEQIETGTAQRKTRALKRIKVVN
AFLHTGTKPEAMVLDALPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQRMIDL
NAPEIMVNNEKRMLQEAVDALFDNGRRGRPVQGAGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPTLKLHQCGLPKTMALELFKPFVQKRLVDLELAKNIKAAKRLIERQR
DEVFDVLEEVIREHPVLLNRAPTLHRLGIQAFEPQLIEGKAIRLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLSANNILKPSDGRPVTVPAQDMIIGLYHLTVVRDGGAGEGR
YFSSAAEAQMAFDLGQLDLNAKIHIRFPADGVVPPRDWQAPQGYEEGDPITLETTLGRAL
FNEALPTTFPFINTVVGKKVLGSIINELAERYPKVDVGASLDALKETGFYWGGRSGVTIA
VSDVIPPDTKKDILAAAEKRAAKIEMDFQEGNIRDEDRRKDLVALWTEVTDQVADEMRKN
FDDWNNVNVMVTSGARGNWMQIRQVAGMRGLVADPKGEIIPRPITSNYREGLSALEYFTA
THGARKGLADTALRTAESGYLTRRLVDVAQDVIVREHDCGTSRGLTKSIVAVDKDGNELR
EVVLDGVPTSVTASDVSPAQWESGKVLAHDEIDTSVYARTLAKDVTDGDGNVIVEAGTDI
GDVALEQLLNAGIKEISVRSVLTCDSRVGTCALCYGRSLATGKLVDIGEAVGIVSAQSIG
EPGTQLTMRTFHTGGAASAEDITQGLPRVQELFEARTPKGEAPLAEAAGKLEIEDMERSR
RLIIKRDDGDEDLVYLVGKRAKLLVPEGSHVTVGQQLVEGLIDPKKVLRISGRRTTQLHL
VSEVQHVYRSQGVEIHDKHIEVIVRQMLRRVTVLDSGSTRLLPGELVDVAVFESANRAVL
AEGGRPASGRPELMGITKASLATDSWLSAASFQETTKVLTEAALNSKSDPLSGLKENVIL
GKLIPAGTGLETLRQLRVEPTNEARAEYEQLNSFMGGGMESFDDFYGYGSFDDYDAAGYG
YGSNF
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgttaatctttttgatcagctacatatttcgctagccacatctgatgatgtg
cgcaagtggagtcatggcactgttaccaagccagaaaccattaactatcgtacgctcaag
ccggaaaaggacggtctgttcggcgaacagatctttggtccaacccgtgactgggagtgt
gcctgtggaaagtacaagcgcccgcgatacaagggaattgtgtgcgaacgctgtggtgtt
gaagttactcgttcgaaggttcgccgcgaacgtatgggccacattgagctcgcagcacct
gtgacccacatctggtacttcaagggtgtcccttcacgccttggctacctactcgatatt
gctccaaaagacctcgaaaaagtcatttactttgcggcatatatggtcaccgacgtcgac
gctgagcggcgccacaacgatatgccggctttgaccgcagaatacgaactagaacgcgca
aacttggaaaaagagcgcgatgcagcaatcgaaaagcgactcaaggctgaagaagacgcg
ctagcgcaagcagagaaagacggtcaggacgctgctgcacgcgctaagatcaagcgcaat
gcagaaaacgaaacccgccgtgttcgtcgcgaatatgaagaagatcttgcccgtttagaa
gacgtgtgggataagttcaccaagctcaaggttggcgatctcgaaggagacgaagaagca
taccgtgagatggcgcttcgctggggtgactacttccaggcattccgtggagctgaagct
attcagcgtcgcttgaagtctttcgatctggaagccgagcatgaggctttagttgaacag
atcgaaactggtaccgcacagcgtaaaactcgcgccttgaagcgcattaaggttgtcaac
gcatttttgcataccggcaccaagccagaggcaatggttctcgatgcgcttccagttatc
ccgccggacttgcgccctatggttcagcttgatggtggccgctttgcgacctcagatctt
aacgatctctaccgtcgtgtcattaaccgcaacaaccgtctccagcgcatgatcgatctg
aacgcgcctgagattatggtgaacaacgaaaagcgtatgcttcaagaagctgttgacgca
ctcttcgacaacggccgtcgcggtcgtccggttcagggtgcaggtaaccgcccattgaag
tcgatttcggatatgctcaagggcaagcagggacgtttccgccaaaacttgcttggaaag
cgcgtggattactctggtcgttcggttatcgtcgtcggcccaaccttgaagctccatcag
tgtggtctgcccaagacgatggcactggaattgttcaagccgttcgtgcaaaagcgactt
gtcgatctggaattggctaagaacattaaggctgcgaagcggttgattgaacgccaacgc
gatgaagttttcgacgtgctcgaagaggttattcgcgagcatccagtcttgctcaaccgt
gctccaaccttgcaccgtttgggtattcaggcgttcgagccacaactcattgaaggtaag
gcaattcgtcttcacccactcgtttgtgcggcgttcaacgctgactttgacggtgaccag
atggcagtccatttgccgctgtcagttgaagctcaagcagaagctcgtatccttatgctc
tcggccaacaatatccttaagccatccgatggtcgcccagtgaccgtcccggcccaggac
atgattattggtctttaccatttgactgttgtccgtgatgggggagcgggcgaaggccgt
tacttctcctcggctgctgaagcacagatggcattcgatcttggtcaactcgatttgaac
gcgaagattcatatccgcttcccagctgacggtgttgttccaccgcgcgattggcaggcg
ccgcaaggctatgaagaaggcgatccgatcaccctcgaaaccacgctgggccgcgccctg
ttcaacgaagcgctgccaacaaccttcccattcatcaacactgtggtgggcaagaaggtt
ttgggttcgatcattaacgaacttgccgagcgttacccgaaggtcgacgtcggtgcctca
cttgacgctttgaaggaaaccggtttctattggggtggacgttctggtgtgacgattgcg
gtttccgacgttattccgccagataccaagaaggatattcttgctgctgccgaaaagcga
gctgccaagatcgaaatggacttccaagaaggtaacatccgtgacgaagatcgtcgtaag
gatcttgttgcgttgtggaccgaagttaccgatcaggttgctgacgaaatgcgcaagaac
ttcgatgactggaataacgtcaatgtgatggttacttctggtgctcgtggtaactggatg
cagattcgccaggttgctggtatgcgtggactcgtggctgatcctaagggtgaaattatt
cctcgtcctatcacctctaactaccgtgaaggcttgtcagcactcgaatacttcaccgct
acccacggtgctcgtaagggacttgccgataccgcgttgcgtaccgctgagtctggctac
ttgacccgtcgtttggttgacgtggcacaggatgtgattgttcgcgaacacgattgtggt
acctcacgtggtttgacaaagtctattgttgcggttgataaagacggtaacgaattgcgc
gaagtcgtccttgacggcgtgccaacgtcggttacggcaagcgacgtttcgccggcgcag
tgggagtcgggcaaggttctggcgcacgatgagatcgatacttcggtttacgcgcgtacc
ttagctaaggatgttaccgacggcgatggcaacgttatcgtcgaagctggtaccgatatt
ggcgacgttgctctcgagcagttgctcaatgctggtattaaagagatctcggttcgttcg
gtgctcacatgtgattcacgtgttggtacttgtgctttgtgctatggtcgttccttggca
accggtaaactcgtcgatatcggcgaagctgtgggtattgtttccgcacagtcgattggc
gaacctggtacccagttgaccatgcgtaccttccacaccggtggtgctgcatcagcagag
gatatcacccagggtctacctcgtgttcaagaactcttcgaagctcgtacccctaagggt
gaagctccgttggctgaagctgcaggtaagctggaaatcgaagatatggaacgttcgcgt
cgcttgatcattaagcgtgacgacggcgatgaagacttggtatatctggtaggcaagcgc
gctaagctcttggttccagaaggttcccacgtcacggttggtcagcagcttgttgaaggc
ttgattgatcctaagaaggtcttgcgtatttcgggacgccgcactactcagttgcactta
gtgtccgaagttcagcatgtttaccgttcgcagggtgtagaaatccacgacaagcacatt
gaagttatcgtacgtcagatgttgcgtcgcgtcactgttctggattcgggtagcactcgt
ttgctaccaggtgaactcgttgacgtggcagtatttgaaagcgctaaccgtgcagttttg
gctgaaggtggccgcccggcatcgggtcgtccagaactcatgggtatcaccaaggcttcc
ttggcaactgattcttggttgtcagccgcctccttccaggaaacgacgaaggtgcttact
gaagctgcactcaattccaagtctgatccgttgtctggtctgaaggaaaacgtcattctt
ggtaagctcattccggctggtactggccttgagacgttgcgtcaattgcgtgttgagcca
acgaatgaggcacgtgctgagtatgagcaactcaattccttcatgggtggtggcatggaa
tcatttgatgatttctatggctatggctcattcgatgattacgacgctgccggatacggt
tacggttctaatttctaa
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